Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01713 ATGACGGATTTGTTCTATTTAGATCGGAAAGAAGAGGAAGATCCAGAAGAAAGAGGAAGATCAGAACAACAATTGTTTTTGTACAGTAGATCAAATAATAACCAAGAGATCTACTCCACCGGATTGCAGATATGGCCACAGTATGTTCATCCTCAACAACAACAAAATCTAGAGAATTACATTTCCTTTGGAGTGGGGCCTAGTAAGAGAACCAGCTTCATGATCAACGGCTCTGATCATGACTTTGTTTCAAGATCAGGGTTTACTATGATCAGACATGGAGGAGGATCAGCAGGATCGAGTGGGATGAATTGTCAAGACTGTGGGAATCAAGCTAAGAAGGATTGTTCCCATTTGCGGTGTAGAACTTGTTGCAAGAGCCGAGGGTTTCACTGTCAAACCCATGTTAAAAGTACCTGGGTTCCAGCTGCTAAACGTCGGGAACGTCAACAACAACGTCACCCACCCTTCCGAACAAATCAGTCAGATCAGACCACTCCCAAAAACCATAGAGAACATCAACCATCTCTTACTCCTACTACCAATTCAGGGTTAGAATTAGCAAATTTTCAAGGTGAATTCAATTCGTCAGCTGTTTTCCGTTGCGTCAAAGTCAGTGCAATTGACAATGTAGAAGAACAATTAGCATATCAAACAGCTGTGAACATTGGTGGACATATGTTCAAAGGAATTCTTTACGACCAAGGTCCAGAAAGCAGTCAAAATTTGAGCAACGGCGACGACGGAGAAGACGGCGGACAAGGGCTGGATCTAGTGATCGGAGCATCCAATGGTAGTGGAAGAGTTAACCAAACCACCACCTCATTTGTGGAGTCTTCAATGTATCCCATCCCAATCAACACATTCGGTACGCAATTTTTTCCTTCCTCTCGAACATAA 900 42.89 MTDLFYLDRKEEEDPEERGRSEQQLFLYSRSNNNQEIYSTGLQIWPQYVHPQQQQNLENYISFGVGPSKRTSFMINGSDHDFVSRSGFTMIRHGGGSAGSSGMNCQDCGNQAKKDCSHLRCRTCCKSRGFHCQTHVKSTWVPAAKRRERQQQRHPPFRTNQSDQTTPKNHREHQPSLTPTTNSGLELANFQGEFNSSAVFRCVKVSAIDNVEEQLAYQTAVNIGGHMFKGILYDQGPESSQNLSNGDDGEDGGQGLDLVIGASNGSGRVNQTTTSFVESSMYPIPINTFGTQFFPSSRT 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24486446 24487948 - Lsi04G017130.1 Lsi04g01713 661762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01713 299 MobiDBLite consensus disorder prediction 143 184 - -
Lsi04g01713 299 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 190 237 IPR006511 -
Lsi04g01713 299 Pfam Domain of unknown function (DUF702) 102 238 - -
Lsi04g01713 299 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 296 - -
Lsi04g01713 299 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 104 146 IPR006510 -
Lsi04g01713 299 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 296 IPR007818 GO:0003700|GO:0006355
Lsi04g01713 299 MobiDBLite consensus disorder prediction 238 265 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi04g01713 Lsi08g01351 CCT
Lsi04g01713 Lsi08g01351 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01713 Lsi-Chr4:24486446 Lsi06g00576 Lsi-Chr6:7568095 4.62E-36 dispersed
Lsi03g00815 Lsi-Chr3:12302971 Lsi04g01713 Lsi-Chr4:24486446 1.08E-78 transposed
Lsi01g00631 Lsi-Chr1:5081554 Lsi04g01713 Lsi-Chr4:24486446 8.52E-66 wgd
Lsi04g01713 Lsi-Chr4:24486446 Lsi07g00230 Lsi-Chr7:2538914 8.22E-59 wgd
Lsi04g01713 Lsi-Chr4:24486446 Lsi08g01351 Lsi-Chr8:21804740 7.82E-79 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25221 PF05142 DUF702 2.10E-59 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01713 - - csv:101218246 473.781