Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01716 ATGGCTCGAGGGAAGATCCAGATCAAGAGAATCGAAAACCCTACGAACAGGCAAGTCACTTACTCCAAGCGTCGCAACGGCCTCTTCAAAAAAGCCAACGAACTCACCGTCCTCTGCGATGCTAAAGTCTCCATTATCATGTTCTCCAGTACTGGAAAACTCCATGAATATATCAGCCCTGCCACTTCGACCAAGGAGCTTTTCGATCAGTACCAGAAGACTTTAGGCGTTGATTTATGGATCTCTCACTATGAGAGAATGCAAGACAATCTCAAGAAGCTTAAAGATGTGAATCGAAATCTCCGGAAGCAGATTAGGCAGAGGATGGGGGAATGTATGAATGATCTGAGTTTTGAAGAACTGCGCTGTCTTGAGCAAGATATGGATAATGCCGTCAGGATCATCCGTGAACGCAAGTACCGGGTGATATCAAACCAGATTGAAACGCACAAGAAGAAGTTAAAGAGCGTGGGAGAAATACACAAGAGTCTTCTCCAGGAGTTTGATATTGCAACAGAGGAAGATCCACATTATGGGCTGGTAGACAATGGAGGAGTAGGAGTTAGAGTAGGAGATTATGAGTCAATTATGGGATTCTCAGGCGGTGGACATCCAGCTCGCATATTTGCATTGCGCCTCCAGCCTAACCACAGCCACAGCCACGCCCACAACCATCCTAATATTCATGTTCATCCACCTTCAGATCTCACTACTTATCCACTCCTGGAGTAG 732 45.9 MARGKIQIKRIENPTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYISPATSTKELFDQYQKTLGVDLWISHYERMQDNLKKLKDVNRNLRKQIRQRMGECMNDLSFEELRCLEQDMDNAVRIIRERKYRVISNQIETHKKKLKSVGEIHKSLLQEFDIATEEDPHYGLVDNGGVGVRVGDYESIMGFSGGGHPARIFALRLQPNHSHSHAHNHPNIHVHPPSDLTTYPLLE 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24503790 24508141 + Lsi04G017160.1 Lsi04g01716 661765

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01716 243 MobiDBLite consensus disorder prediction 217 243 - -
Lsi04g01716 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lsi04g01716 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lsi04g01716 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lsi04g01716 243 Coils Coil 84 111 - -
Lsi04g01716 243 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Lsi04g01716 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lsi04g01716 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lsi04g01716 243 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Lsi04g01716 243 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Lsi04g01716 243 Pfam K-box region 82 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lsi04g01716 243 PANTHER APETALA3 1 224 - -
Lsi04g01716 243 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lsi04g01716 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lsi04g01716 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lsi04g01716 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 224 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01716 K09264 K09264; MADS-box transcription factor, plant - csv:101218008 426.787
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01716 Lsi-Chr4:24503790 Lsi04g01838 Lsi-Chr4:25508920 5.43E-33 dispersed
Lsi04g01716 Lsi-Chr4:24503790 Lsi05g01991 Lsi-Chr5:26983362 6.93E-32 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1037 Blo01g01582 . Bda01g00508 Bda03g00275 Bpe02g00367 Bpe04g00229 Bma04g00225 Bma01g02346 . . Cma01g01941 Cma09g00125 Car01g01517 . . Cpe06g00084 . . . . . . . . . . . . . . . Cone4ag1947 . . . Lsi04g01716 Csa03g04253 Chy04g00443 . . . . . . . . . . Cmo01g02003 Cmo09g00122 . . . Car09g00110 . Cpe02g00096 . . . . . . . Cla05g01900 Cam05g2036 Cec05g2044 Cco05g2100 Clacu05g2028 Cmu05g1908 Cre05g2030 . . . Cme04g00496
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi08g00034 . 1 226 MADS-box Gene Family AT3G58780 59.5 7.5e-70 260.8
Lsi02g00845 CCT 28 222 MADS-box Gene Family AT3G58780 60.4 4.1e-60 228.4
Lsi10g01545 . 1 98 MADS-box Gene Family AT3G58780 80.6 4.4e-38 155.2
Lsi07g00959 . 1 221 MADS-box Gene Family AT1G26310 52.2 3.6e-56 215.3
Lsi08g00907 . 1 163 MADS-box Gene Family AT1G26310 57.4 5.3e-47 184.9
Lsi07g00957 . 1 167 MADS-box Gene Family AT1G26310 55.3 1.9e-41 166.4
Lsi09g01915 CCT 5 146 MADS-box Gene Family AT1G26310 56.4 5.8e-38 154.8
Lsi08g00034 . 1 227 MADS-box Gene Family AT4G09960 73.5 1.4e-86 316.2
Lsi02g00845 CCT 30 212 MADS-box Gene Family AT4G09960 57.3 3.6e-55 211.8
Lsi07g00957 . 1 169 MADS-box Gene Family AT3G61120 54.4 1.2e-40 163.7
Lsi09g00321 . 5 216 MADS-box Gene Family AT4G11880 57.7 9.2e-56 213.8
Lsi05g01991 CCT 1 186 MADS-box Gene Family AT4G11880 52.5 1.4e-43 173.3
Lsi05g01277 . 1 201 MADS-box Gene Family AT4G11880 51.0 1.6e-39 159.8
Lsi03g01188 . 1 208 MADS-box Gene Family AT5G13790 50.4 3.1e-45 179.1
Lsi04g02291 . 1 207 MADS-box Gene Family AT2G22630 58.4 6.3e-52 201.1
Lsi01g00825 . 3 165 MADS-box Gene Family AT2G22630 58.3 5.4e-43 171.4
Lsi09g00321 . 5 216 MADS-box Gene Family AT4G22950 61.4 4.6e-60 228.0
Lsi05g01991 CCT 1 186 MADS-box Gene Family AT4G22950 50.7 8.5e-46 180.6
Lsi07g00957 . 1 254 MADS-box Gene Family AT5G15800 72.7 3.0e-98 355.1
Lsi07g00959 . 1 161 MADS-box Gene Family AT5G15800 52.0 2.3e-37 152.9
Lsi05g01991 CCT 1 159 MADS-box Gene Family AT2G45660 69.8 1.2e-52 203.0
Lsi09g00321 . 5 163 MADS-box Gene Family AT2G45660 65.4 4.6e-49 191.0
Lsi09g01914 . 1 199 MADS-box Gene Family AT2G45660 55.3 2.1e-46 182.2
Lsi05g01277 . 1 183 MADS-box Gene Family AT2G45660 51.4 1.2e-38 156.4
Lsi04g02291 . 1 218 MADS-box Gene Family AT4G37940 62.1 1.3e-59 226.5
Lsi01g00825 . 3 128 MADS-box Gene Family AT4G37940 69.0 1.1e-42 170.2
Lsi08g01026 . 38 183 MADS-box Gene Family AT2G22540 63.7 2.3e-44 176.0
Lsi08g01026 . 38 181 MADS-box Gene Family AT4G24540 60.3 9.8e-42 167.2
Lsi07g00957 . 1 175 MADS-box Gene Family AT2G03710 67.0 1.3e-58 223.0
Lsi02g00138 . 1 197 MADS-box Gene Family AT2G03710 54.3 7.0e-49 190.7
Lsi07g00957 . 1 177 MADS-box Gene Family AT3G02310 84.3 4.5e-78 287.7
Lsi02g00138 . 1 196 MADS-box Gene Family AT3G02310 58.2 7.8e-54 207.2
Lsi09g01915 CCT 5 142 MADS-box Gene Family AT3G02310 58.6 6.4e-40 161.0
Lsi07g00959 . 1 158 MADS-box Gene Family AT3G02310 53.8 1.1e-36 150.2
Lsi05g01991 CCT 1 144 MADS-box Gene Family AT5G62165 62.5 6.8e-42 167.2
Lsi09g00321 . 5 158 MADS-box Gene Family AT5G62165 58.4 8.9e-42 166.8
Lsi05g01277 . 1 172 MADS-box Gene Family AT5G62165 54.1 1.5e-41 166.0
Lsi04g02291 . 1 141 MADS-box Gene Family AT2G14210 74.6 1.7e-52 203.0
Lsi01g00825 . 3 128 MADS-box Gene Family AT2G14210 63.8 1.2e-37 153.7
Lsi08g00034 . 1 183 MADS-box Gene Family AT2G42830 70.8 2.0e-67 252.7
Lsi02g00845 CCT 30 186 MADS-box Gene Family AT2G42830 72.1 9.0e-60 227.3
Lsi10g01545 . 1 98 MADS-box Gene Family AT2G42830 78.6 1.6e-37 153.3
Lsi09g01915 CCT 5 260 MADS-box Gene Family AT2G45650 54.6 3.9e-71 265.0
Lsi05g01280 . 1 181 MADS-box Gene Family AT2G45650 53.6 5.0e-42 168.3
Lsi08g00034 . 1 168 MADS-box Gene Family AT2G45650 51.8 3.4e-38 155.6
Lsi01g00165 . 506 622 MADS-box Gene Family AT1G29960 54.7 9.6e-39 156.4
Lsi09g00321 . 5 151 MADS-box Gene Family AT5G51870 53.7 6.4e-37 151.0
Lsi07g00959 . 1 189 MADS-box Gene Family AT3G30260 55.1 5.3e-44 174.9
Lsi07g00957 . 1 253 MADS-box Gene Family AT1G24260 58.0 1.0e-68 256.9
Lsi09g01728 . 1 180 MADS-box Gene Family AT1G24260 63.8 1.0e-52 203.8
Lsi07g00959 . 1 161 MADS-box Gene Family AT1G24260 52.1 1.4e-38 156.8
Lsi04g01716 . 1 243 MADS-box Gene Family AT3G54340 57.6 4.9e-68 254.6
Lsi04g01838 . 23 128 MADS-box Gene Family AT5G20240 74.5 3.3e-41 164.9
Lsi04g01838 . 23 128 MADS-box Gene Family AT5G20240 74.5 3.3e-41 164.9
Lsi04g01716 . 1 243 MADS-box Gene Family AT3G54340 57.6 4.9e-68 254.6
Lsi08g00034 . 1 226 MADS-box Gene Family AT3G58780 59.5 7.5e-70 260.8
Lsi02g00845 CCT 28 222 MADS-box Gene Family AT3G58780 60.4 4.1e-60 228.4
Lsi10g01545 . 1 98 MADS-box Gene Family AT3G58780 80.6 4.4e-38 155.2
Lsi07g00957 . 1 254 MADS-box Gene Family AT5G15800 72.7 3.0e-98 355.1
Lsi07g00959 . 1 161 MADS-box Gene Family AT5G15800 52.0 2.3e-37 152.9
Lsi07g00957 . 1 175 MADS-box Gene Family AT2G03710 67.0 1.3e-58 223.0
Lsi02g00138 . 1 197 MADS-box Gene Family AT2G03710 54.3 7.0e-49 190.7
Lsi07g00957 . 1 177 MADS-box Gene Family AT3G02310 84.3 4.5e-78 287.7
Lsi02g00138 . 1 196 MADS-box Gene Family AT3G02310 58.2 7.8e-54 207.2
Lsi09g01915 CCT 5 142 MADS-box Gene Family AT3G02310 58.6 6.4e-40 161.0
Lsi07g00959 . 1 158 MADS-box Gene Family AT3G02310 53.8 1.1e-36 150.2
Lsi08g00034 . 1 183 MADS-box Gene Family AT2G42830 70.8 2.0e-67 252.7
Lsi02g00845 CCT 30 186 MADS-box Gene Family AT2G42830 72.1 9.0e-60 227.3
Lsi10g01545 . 1 98 MADS-box Gene Family AT2G42830 78.6 1.6e-37 153.3
Lsi09g01915 CCT 5 260 MADS-box Gene Family AT2G45650 54.6 3.9e-71 265.0
Lsi05g01280 . 1 181 MADS-box Gene Family AT2G45650 53.6 5.0e-42 168.3
Lsi08g00034 . 1 168 MADS-box Gene Family AT2G45650 51.8 3.4e-38 155.6
Lsi07g00957 . 1 253 MADS-box Gene Family AT1G24260 58.0 1.0e-68 256.9
Lsi09g01728 . 1 180 MADS-box Gene Family AT1G24260 63.8 1.0e-52 203.8
Lsi07g00959 . 1 161 MADS-box Gene Family AT1G24260 52.1 1.4e-38 156.8
Lsi07g00959 . 1 221 MADS-box Gene Family AT1G26310 52.2 3.6e-56 215.3
Lsi08g00907 . 1 163 MADS-box Gene Family AT1G26310 57.4 5.3e-47 184.9
Lsi07g00957 . 1 167 MADS-box Gene Family AT1G26310 55.3 1.9e-41 166.4
Lsi09g01915 CCT 5 146 MADS-box Gene Family AT1G26310 56.4 5.8e-38 154.8
Lsi08g00034 . 1 227 MADS-box Gene Family AT4G09960 73.5 1.4e-86 316.2
Lsi02g00845 CCT 30 212 MADS-box Gene Family AT4G09960 57.3 3.6e-55 211.8
Lsi07g00957 . 1 169 MADS-box Gene Family AT3G61120 54.4 1.2e-40 163.7
Lsi09g00321 . 5 216 MADS-box Gene Family AT4G11880 57.7 9.2e-56 213.8
Lsi05g01991 CCT 1 186 MADS-box Gene Family AT4G11880 52.5 1.4e-43 173.3
Lsi05g01277 . 1 201 MADS-box Gene Family AT4G11880 51.0 1.6e-39 159.8
Lsi03g01188 . 1 208 MADS-box Gene Family AT5G13790 50.4 3.1e-45 179.1
Lsi04g02291 . 1 207 MADS-box Gene Family AT2G22630 58.4 6.3e-52 201.1
Lsi01g00825 . 3 165 MADS-box Gene Family AT2G22630 58.3 5.4e-43 171.4
Lsi09g00321 . 5 216 MADS-box Gene Family AT4G22950 61.4 4.6e-60 228.0
Lsi05g01991 CCT 1 186 MADS-box Gene Family AT4G22950 50.7 8.5e-46 180.6
Lsi05g01991 CCT 1 159 MADS-box Gene Family AT2G45660 69.8 1.2e-52 203.0
Lsi09g00321 . 5 163 MADS-box Gene Family AT2G45660 65.4 4.6e-49 191.0
Lsi09g01914 . 1 199 MADS-box Gene Family AT2G45660 55.3 2.1e-46 182.2
Lsi05g01277 . 1 183 MADS-box Gene Family AT2G45660 51.4 1.2e-38 156.4
Lsi04g02291 . 1 218 MADS-box Gene Family AT4G37940 62.1 1.3e-59 226.5
Lsi01g00825 . 3 128 MADS-box Gene Family AT4G37940 69.0 1.1e-42 170.2
Lsi08g01026 . 38 183 MADS-box Gene Family AT2G22540 63.7 2.3e-44 176.0
Lsi08g01026 . 38 181 MADS-box Gene Family AT4G24540 60.3 9.8e-42 167.2
Lsi05g01991 CCT 1 144 MADS-box Gene Family AT5G62165 62.5 6.8e-42 167.2
Lsi09g00321 . 5 158 MADS-box Gene Family AT5G62165 58.4 8.9e-42 166.8
Lsi05g01277 . 1 172 MADS-box Gene Family AT5G62165 54.1 1.5e-41 166.0
Lsi04g02291 . 1 141 MADS-box Gene Family AT2G14210 74.6 1.7e-52 203.0
Lsi01g00825 . 3 128 MADS-box Gene Family AT2G14210 63.8 1.2e-37 153.7
Lsi01g00165 . 506 622 MADS-box Gene Family AT1G29960 54.7 9.6e-39 156.4
Lsi09g00321 . 5 151 MADS-box Gene Family AT5G51870 53.7 6.4e-37 151.0
Lsi07g00959 . 1 189 MADS-box Gene Family AT3G30260 55.1 5.3e-44 174.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003277 3 1 2 5 4 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 2 1 1 1 1 1 3 1 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25222 PF01486 K-box 5.10E-22 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01716 Lsi_Chr04 FPKM 4.176117 4.299683 4.961591 4.868749 0.564859 0.414198 0.541157 2.60897 3.089807 3.199719