Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01717 ATGGGGAAGAAGAAGTTCTTCGACAAGAAAAAATCCGCAACTTTCCAATTACTCGCTCGTGACTCATCTGATCCCAATTACGATGGAACTGCCGCCACCGACCGTGTTTTTGTTCGTGTCGACAACCATTCTTATACTCTCCCTGCCTTCGATGATGGCCCTGCCGAGGATGAAGATCCTAACTCAATATTTGCCGATGCTCCTGAAGATTGTGATGATGAAGAGAATGCAGGTTTTGGGCCGTCTGTGCGGTCTCGTGGAGAAGTTGGTGGAACAGCGCCATTACCCGAAAATGTTAGAAGGGAGATTTTGGAGCTGGGGTTCCCTGATGATGGTTACAATTATTTGCTGCACCTTCGGGAGATTAAGAATACTGGTGGTGGTTCGGCGTTTTATCAGAACCCCAAGGCCAAGCTGAATCAGGTTCCACGCGATGAGAAGGCGTATGACGCCTCCAGAGTGATTGTTTCTAAAGGGAACGGTGATGCCGATGAGAACATTTACAAAGTTGCATCCAAGACTGTTGGAGTCAGGGTTCAGAATGTTGTTGACCCTGAAATAGCTGCACTACTTGATGATGATGATTTATCGCGATTTGGTTCTGATGTTGAGGACTTAGAAGAGGACTTTGTAGTTCAGGCAAACTTATGTGAAGAGGGGGAGGATGATGCAACGAACACTAAGTTTGGTCTGATTGAGGATGTTGAGAGAACGGCAGAAAGCCATTTAGTTAACAACAAATCTTTTGGTGACCACATTTTTGAGGACGCAGATATGGACCATTTGGAAGAAGTAAGCGACAATAGTGATGTTGATAAGCCAAGAACTCGTCGGCTTTTGGATGATCGATTCGACACTCTGTTGAGCCGGGACTATGCATCAAGTGACAATGATGGCACTGATTATGATGAACCCTGTATAGCTGAAGAAGACGAATCCCTTGCCCAAAAGCTCAATCATGCCCTTGGCAATCATAGTAAGGATGATTTGGAACTTGAGCAAGGATATAAGGCTCCTGCAGATATATTGAGTGCTAAAGAAGGATTAGAAGATAAAGAGCTTTTGCAGTCTGCCACTGATGTAATTCACCGGTGTATGGAATATGCTGAGAAATATCAAAATGAAGATGATGACATTGAAGATGAATTTATATTTGAGGAGAGCAGTGATGAATCTGAAGTTTGGGATTGTGAGACTATTGTCTCTACATGTTCTAATCTCAATAACCATCCTGGGAAGATCATAGCTCCTGAAATGACCAGAAGGAAGAAGTTGGCTGAAACCGTCTCTGGAGCTCTTAATTCCAATAATCCCGTGATAACTCTTAGGGGGAAAGAGAAGCTACCAGTGGACTTTCTACCTCATGGTCGAAAAGTCGTTGACAAAGTCAAAGATATGGGCAACTTGAGAACCGAACATCAGAAGAGGAAGTCAAATGGTCAGGAGTCCAAGGAAGAGAAGAAGGAGAGAAAGGCTGCTATCAAAGAAGCACGTCGTGAAGCACGCCGCACAAAAAAAGAAATGAAAGGCCTTTACAAGGGGGAAGCTCATCGTGCTCAGAAAGTAGTTGCTTTTTCTGGTCCAGCATCTATTCATCTTATGTAA 1605 43.99 MGKKKFFDKKKSATFQLLARDSSDPNYDGTAATDRVFVRVDNHSYTLPAFDDGPAEDEDPNSIFADAPEDCDDEENAGFGPSVRSRGEVGGTAPLPENVRREILELGFPDDGYNYLLHLREIKNTGGGSAFYQNPKAKLNQVPRDEKAYDASRVIVSKGNGDADENIYKVASKTVGVRVQNVVDPEIAALLDDDDLSRFGSDVEDLEEDFVVQANLCEEGEDDATNTKFGLIEDVERTAESHLVNNKSFGDHIFEDADMDHLEEVSDNSDVDKPRTRRLLDDRFDTLLSRDYASSDNDGTDYDEPCIAEEDESLAQKLNHALGNHSKDDLELEQGYKAPADILSAKEGLEDKELLQSATDVIHRCMEYAEKYQNEDDDIEDEFIFEESSDESEVWDCETIVSTCSNLNNHPGKIIAPEMTRRKKLAETVSGALNSNNPVITLRGKEKLPVDFLPHGRKVVDKVKDMGNLRTEHQKRKSNGQESKEEKKERKAAIKEARREARRTKKEMKGLYKGEAHRAQKVVAFSGPASIHLM 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24511548 24515535 + Lsi04G017170.1 Lsi04g01717 661766

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01717 534 Coils Coil 480 514 - -
Lsi04g01717 534 MobiDBLite consensus disorder prediction 52 67 - -
Lsi04g01717 534 Pfam Low temperature viability protein 8 235 IPR007307 GO:0042274
Lsi04g01717 534 PANTHER LOW-TEMPERATURE VIABILITY PROTEIN LTV1-RELATED 1 534 IPR007307 GO:0042274
Lsi04g01717 534 MobiDBLite consensus disorder prediction 47 67 - -
Lsi04g01717 534 MobiDBLite consensus disorder prediction 75 94 - -
Lsi04g01717 534 MobiDBLite consensus disorder prediction 465 513 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01717 K14798 LTV1; protein LTV1 - csv:101207600 880.167
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1044 . Blo12g00897 . . . Bpe04g00230 Bma04g00226 . . . Cma01g01947 . Car01g01521 . . . . . . . . . . . . . . . . . . . . Cone17ag1380 Cone20ag0103 Lsi04g01717 . . . . . . . . . . . . . . . . . . . Cpe02g00092 . . . . . . . Cla05g01899 Cam05g2035 Cec05g2043 Cco05g2099 Clacu05g2027 Cmu05g1907 Cre05g2029 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004778 0 1 1 1 1 1 1 1 1 1 1 1 1 4 2 0 1 2 1 1 1 1 1 1 1 1 1 2 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01717 Lsi_Chr04 FPKM 36.279659 33.813423 48.719723 48.538914 72.872452 87.576324 71.988258 53.013168 55.343239 51.247593