Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01719 ATGCGGCCCACAACAGAAACCTCCCAATGGAGTTATTCCGTCTTCGAGTGGAGGCTGAGATCATGCCACCGTCTTCCCTCCGACCGCGGCGTTTCTGGTCGTCGCCATTTGGCCATTAGGAAAGAGAAACTCCGTCCAACTCCGACGATTCGTTCACCGACACAACAAATTTTCGGCTCTGCAGACGGTGAGTTGCGTATATGGGACACGGCTCAGCATAGGACGGTATCATCGGCATGGGTGCATAGTGCTGCACACGGAATTATTAGTGTTGCTTGCAGTCGTTCTATTGGGACAAATAGAGTTGTCAGCCAGGGTAGGGATGGAACTGTAAAGTGCTGGGATATTGATGATAGGGCTCTGTCCAGGGTCTGCCTGATTTCTGTTGATATACCAGCGGATGGGCTGAAGTATGTGGCTGTCGCAGGAGAGCGATCTTCAGAGGTTGAAATTTGGGATCTGAATGCTGGGGAAAGGTTGCTACGACTTCCTCCAAACTGTGAAGGGGATTGCCGAAATATCTCTACCAAGGATAGAGGATTGTGCATGGCAGTTCAAGCCTTTTTACCGTCTAAATCTCAGGGATTCTTAAATGTCTTGTCTGGGAATCCGGCAGTTCCAGTAACATCAGTGAAGTGTCATCTAGAGCCAGTTTTAAGCATTTGCGTTGATGGATCGTGCCATGGTGGGATCTCAGGAGCTGCAGATGACAAAGTTGTGATGTTTAGTTTGGATCATTCCACGGGGACATGCCTGGTGAAGAAAGAAATTACTTTGGAACGGCCTGGCATAGCAAAGGTCTCTATTCGACCAGATAACAAGATTGCTGCAACTGCTGGATGGGATCACAGACTGCGGGTATATAATTATCGGAAAGGAAATCCTCTTGCTATATTGAAGTACCATCAGGCCTTGAATCTGCTTCCTGTTTCTTATTGTTTAGTATCTCAAAAGCCAACAGTTTTCGATAAGATTTTCACTTCTCATACTTTCAGTGTAATGCTGTATCATACTCGGACGACTTTTGATCGCTGCCGCAAGACCGTTCTTTTAACAGATATGATTGAGCAAACGATGGTTCTGTTCTTCTGCCACGTGTTGCTCTTCGCCGGAATGTCTTTTACCCAGGCTGCCGCCGCCGGCCACTGGCAACTTTTGCAGGAAACCATCGGCATTTCAGCCATGCACATGCAGCTACTCCACAACGATCGTGTCGTCATGTTCGACGGCACCGACTTTGGCCCATCCAACTTATCGTTCCCCAGAGCAAGATGCACAAGATCCTACAATGGACGTCGAATCAGGTACGACTGTACTGCCCATTCTGTCGAGTACGACGTAGCCACCAACACATTCCGGCCACTCGCAGTTCAGACAGATATGTGGTGCTCGTCCGGTGGAGCCATGCGCGACGGCGCTCTGGTTCAAACCGGTGGTTTCAAAGCCGGCGACCGGACCGTCAGGATTTTCAAACCTTGCCCAAGATGTGATTGGGAAGAGATTCCGATGGGGTTACTTACCCGCCGGTGGTATGCCACCAACCACATTCTCCCCGACGGCAGACAGATCATTATCGGCGGCCGGAAACGCTTCAGCTATGAATTCTTTCCTAAACCTGCACCGTTTTATTGGCATTTGGCGAAGACTAAATCTGCTCCAAAGGCATATAGTTTGCCGTTCTTGGTGCAAACCAACGATGGCCATATCGAAAACAATTTGTACCCATTTGTGTTTCTTCATATAGATGGGAGCTTGTTCATCTTCGCGAATAATCGAGCGATCTTATTCGATTACTCCAAGAACAAGATTCTCAAAACCTTCCCGGAAATTCCAGGCGGCGATCCAAGGAATTACCCGAGTACTGGATCGGCGGTGATTCTTCCATTGGATTTGCAGGCGAAATTGATTGAAGTCGAGGTCATGGTCTGCGGTGGCGCTCCAAAAGGAGCTCATATAAAAGCCCGCAATGGAGTTTTCGTCGAAGCATTGAACACATGCGCAAGAATCAAAATTACCAGTCCAAATCCCACGTGGGTTCTTGAGACTATGCCACTTTCCCGAGTTATGGGCGACATGTTGTTACTTCCAAACGGCAACGTTTTGCTGATCAACGGCGGGTCGTTCGGGACCGCCGGCTGGGAACTCGGCCGGAATCCGGTTCTCAACCCGGTTCTCTACCAACCCAATAACCCACCCGGTTCAAGATTCGAATTGAACGACCCGAGTACTATCCCTCGTATGTATCATTCGACGGCGATCTTACTTCGGGATGGCCGGATTCTCGTCGGCGGGAGTAACCCGCATCCCGGTTACAATTTATCCGGCGTTCCTTTTCCGACGGAACTTAGCTTAGAAGCATTTCATCCTTCATATCTGGACTCTCAATTCGCAGCCTTGCGTCCCATTATAATAACACCCAGATCCCAAATTATGCTTTTTCATGGACAGAGATTCAAAGTGCGGTTTACAGTGATCGACGAATTGGATCCGACGAAAGTCTCAGTCACCATGTTGGCTCCGCCTTTCAATACCCATTCGTTTTCGATGAACCAAAGGCTGTTGGTGCTCGGCGGTGGCAACGTGACGACGAACATATGGCCGGATCTGATGTATGAAGTTGAGGTTAACGTTCCTGTTTGCGGTAATATTGCACCGTCTGGGTTTTATATATTATTTGTTGTTCATCAATGCGTTCCAAGTGAAGGAATTTGGGTCCAGATACTTTGA 2727 48.62 MRPTTETSQWSYSVFEWRLRSCHRLPSDRGVSGRRHLAIRKEKLRPTPTIRSPTQQIFGSADGELRIWDTAQHRTVSSAWVHSAAHGIISVACSRSIGTNRVVSQGRDGTVKCWDIDDRALSRVCLISVDIPADGLKYVAVAGERSSEVEIWDLNAGERLLRLPPNCEGDCRNISTKDRGLCMAVQAFLPSKSQGFLNVLSGNPAVPVTSVKCHLEPVLSICVDGSCHGGISGAADDKVVMFSLDHSTGTCLVKKEITLERPGIAKVSIRPDNKIAATAGWDHRLRVYNYRKGNPLAILKYHQALNLLPVSYCLVSQKPTVFDKIFTSHTFSVMLYHTRTTFDRCRKTVLLTDMIEQTMVLFFCHVLLFAGMSFTQAAAAGHWQLLQETIGISAMHMQLLHNDRVVMFDGTDFGPSNLSFPRARCTRSYNGRRIRYDCTAHSVEYDVATNTFRPLAVQTDMWCSSGGAMRDGALVQTGGFKAGDRTVRIFKPCPRCDWEEIPMGLLTRRWYATNHILPDGRQIIIGGRKRFSYEFFPKPAPFYWHLAKTKSAPKAYSLPFLVQTNDGHIENNLYPFVFLHIDGSLFIFANNRAILFDYSKNKILKTFPEIPGGDPRNYPSTGSAVILPLDLQAKLIEVEVMVCGGAPKGAHIKARNGVFVEALNTCARIKITSPNPTWVLETMPLSRVMGDMLLLPNGNVLLINGGSFGTAGWELGRNPVLNPVLYQPNNPPGSRFELNDPSTIPRMYHSTAILLRDGRILVGGSNPHPGYNLSGVPFPTELSLEAFHPSYLDSQFAALRPIIITPRSQIMLFHGQRFKVRFTVIDELDPTKVSVTMLAPPFNTHSFSMNQRLLVLGGGNVTTNIWPDLMYEVEVNVPVCGNIAPSGFYILFVVHQCVPSEGIWVQIL 908
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24524412 24531560 + Lsi04G017190.1 Lsi04g01719 661768

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01719 908 Pfam Galactose oxidase-like, Early set domain 800 907 IPR015202 -
Lsi04g01719 908 Gene3D - 191 365 IPR015943 GO:0005515
Lsi04g01719 908 SUPERFAMILY WD40 repeat-like 57 314 IPR036322 GO:0005515
Lsi04g01719 908 SMART WD40_4 250 289 IPR001680 GO:0005515
Lsi04g01719 908 SMART WD40_4 204 243 IPR001680 GO:0005515
Lsi04g01719 908 SMART WD40_4 72 115 IPR001680 GO:0005515
Lsi04g01719 908 Pfam Glyoxal oxidase N-terminus 395 645 IPR009880 -
Lsi04g01719 908 PANTHER SECRETED PROTEIN-RELATED 372 907 - -
Lsi04g01719 908 SUPERFAMILY Galactose oxidase, central domain 428 793 IPR011043 -
Lsi04g01719 908 Gene3D - 51 190 IPR015943 GO:0005515
Lsi04g01719 908 PANTHER OXIDASE, PUTATIVE, EXPRESSED-RELATED 372 907 - -
Lsi04g01719 908 SUPERFAMILY E set domains 797 907 IPR014756 -
Lsi04g01719 908 CDD E_set_GO_C 796 907 IPR015202 -
Lsi04g01719 908 Gene3D - 377 799 IPR037293 -
Lsi04g01719 908 Gene3D Immunoglobulins 800 908 IPR013783 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01719 - - - cmo:103504022 1050.04
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01719 Lsi-Chr4:24524412 Lsi11g00247 Lsi-Chr11:2510611 5.92E-152 dispersed
Lsi04g01719 Lsi-Chr4:24524412 Lsi04g01720 Lsi-Chr4:24539475 0 tandem
Lsi06g01601 Lsi-Chr6:26391536 Lsi04g01719 Lsi-Chr4:24524412 1.39E-157 transposed
Lsi04g01719 Lsi-Chr4:24524412 Lsi08g01340 Lsi-Chr8:21702502 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1053 . . . . . . . . . . Cma01g01949 . Car01g01523 . . . . . . . . . . . . . . . . . . . Cone7ag1864 . . Lsi04g01719 . . . . . . . . . . . Sed01g2508 Cmo01g02010 . . . . . . Cpe02g00090 Bhi09g02120 Tan01g4986 Cmetu02g1305 . Hepe01g1640 Mch11g0142 . Cla05g01896 Cam05g2032 Cec05g2041 Cco05g2097 Clacu05g2024 Cmu05g1904 Cre05g2027 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000551 5 3 4 6 4 4 4 4 4 3 2 3 4 3 5 4 4 4 4 4 3 3 5 3 2 3 3 5 3 1 109
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01719 Lsi_Chr04 FPKM 42.253014 44.875294 101.181961 100.071991 19.817888 16.965025 20.684013 157.319626 147.900406 156.899811