Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01720 ATGGTTTATACCACGCGTTTTCTTATTGGTGCGAGCCCAAGTCTCAGCCTTCTGTCCTCAAAACTCGTGTATATAAACCCACTCGCCTTTAAACCATGCACTCAAAAGCAGCTCAAAACCTCCAAATTAAATATGCATTTTCCTTATATCATTTCATCACTCATTTTTACCCATGTATTCATCTTCTCCGGCTTCCCTCTCACGGAGGCGGCCGGCGGGAGTTGGCGGTTGCTGCAGAGAAGCGTCGGCATATCAGCCATGCACATGCAGTTGCTTCGAAACGACCGCGTTGTCATGTTCGACCGCACTGATTTTGGTCCCTCCAATTTGTCTTTGCCTGACGGCAAATGCCTTAGAGATCCTAACGCCAACATAAAAGTCGACTGTACGGCTCATTCTATTGAGTATAATGTCATCACCAACACATTCCGCCCACTCATGGTCCAATCCGATGTTTGGTGTTCCTCCGGCTCCGTATTCCCCGACGGCACTCTCGTCCAAACTGGCGGTTTCAAATCCGGCGAACGTCGAGTCAGAATGTTCAAGCCCTGTCCCACGTGCGACTGGGAGGAAATTCCGTCCGCACTATCGGCCCGCCGGTGGTATGCTACTAACCATATTCTTCCCGACGGTAGACAGATCATCATCGGCGGCCGGAGACAGTTCAATTACGAATTCTACCCAAAAAGCAGAGCAACTCAAAGAGTGTTCGATTTGCCTTTCTTGGCAGAGACCAATGATAAAAACATCGAAAACAATTTATACCCATTTGTTTTCCTTCAACCCGATGGGAATTTATTCATATTCGCCAACAATCGAGCGATTCTATTCGATTACACCAAAAACAGAGTCGTCAAAACATTTCCGACGATTCCCGACGGCGAGCCGCGGTGCTACCCGAGTACCGGCTCCGCCGTGATGCTTCCGTTGAAAGTGGATGCTAAATCTATTGAAGTTGAAGTATTGGTGTGCGGTGGAGCTCCGAAAGGGGCTTATACAAAGGCCAATCGTGGGGTTTTTGTAGAGGCGTTGAGAACTTGTGCCAGAATTAAAATTACTGATCGGAATCCTCAGTGGGTCATTGAAACAATGCCGCAACCCAGAGTGATGGTTGATATGTTGTTGCTTCCAAACGGCAACGTTTTGCTCATTAACGGAGGCTCCGCCGGTGCCGCCGGTTGGGAAATCGGCCGAAACCCGGTATTAAACCCGGTTCTGTACCACACGAATAACCCGGTCGGTAAAAGATTTGAATTGCAAAATCCGACCACAATTCCCCGAATGTACCACTCGACGGCGATATTACTCCGCGACGGCCGTGTTCTCGTCGGCGGCAGTAATGCACACGCGTCTTACAATTTCACCGGCGTCCTTTACCCGACGGAATTAAGGTTAGAAGCATTTTCCCCTTCATATTTAGACCCTGAATTTTCATATCTACGACCGGCGATACAATTCCCAGTTTCTCCGGCAAAGCTCCGGCATGGGCAAGCATTGAAAGTGGGTTTCACAGTCCCTGGAAAAGTTGACCCGACAAGGGTGTCGGTGACGATTTTTTCGCCGTCGTTTAACACTCATTCATTCTCCATGAATCAGAGGTTGTTGATTCTGGGCAGCAGGAATTACAGACTTAGAGGGAATTTGAAATATGAAGTTGAGGTTACAATTCCGGGATCAGGTAATATTGCACCGTCGGGATATTATATATTGTACCTTGTTCATCAGGAAATTCCGAGCGAGGGAATTTGGGTGCAAATTCAGTGA 1764 48.02 MVYTTRFLIGASPSLSLLSSKLVYINPLAFKPCTQKQLKTSKLNMHFPYIISSLIFTHVFIFSGFPLTEAAGGSWRLLQRSVGISAMHMQLLRNDRVVMFDRTDFGPSNLSLPDGKCLRDPNANIKVDCTAHSIEYNVITNTFRPLMVQSDVWCSSGSVFPDGTLVQTGGFKSGERRVRMFKPCPTCDWEEIPSALSARRWYATNHILPDGRQIIIGGRRQFNYEFYPKSRATQRVFDLPFLAETNDKNIENNLYPFVFLQPDGNLFIFANNRAILFDYTKNRVVKTFPTIPDGEPRCYPSTGSAVMLPLKVDAKSIEVEVLVCGGAPKGAYTKANRGVFVEALRTCARIKITDRNPQWVIETMPQPRVMVDMLLLPNGNVLLINGGSAGAAGWEIGRNPVLNPVLYHTNNPVGKRFELQNPTTIPRMYHSTAILLRDGRVLVGGSNAHASYNFTGVLYPTELRLEAFSPSYLDPEFSYLRPAIQFPVSPAKLRHGQALKVGFTVPGKVDPTRVSVTIFSPSFNTHSFSMNQRLLILGSRNYRLRGNLKYEVEVTIPGSGNIAPSGYYILYLVHQEIPSEGIWVQIQ 587
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24539475 24541238 + Lsi04G017200.1 Lsi04g01720 661769

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01720 587 Gene3D Immunoglobulins 480 587 IPR013783 -
Lsi04g01720 587 Pfam Glyoxal oxidase N-terminus 87 326 IPR009880 -
Lsi04g01720 587 SUPERFAMILY E set domains 478 586 IPR014756 -
Lsi04g01720 587 CDD E_set_GO_C 481 586 IPR015202 -
Lsi04g01720 587 SUPERFAMILY Galactose oxidase, central domain 113 474 IPR011043 -
Lsi04g01720 587 PANTHER SECRETED PROTEIN-RELATED 67 587 - -
Lsi04g01720 587 Pfam Galactose oxidase-like, Early set domain 481 586 IPR015202 -
Lsi04g01720 587 PANTHER OXIDASE, PUTATIVE, EXPRESSED-RELATED 67 587 - -
Lsi04g01720 587 Gene3D - 69 476 IPR037293 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01720 - - - csv:101204153 968.763
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g01720 Lsi08g01340 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g02151 Lsi-Chr3:32654183 Lsi04g01720 Lsi-Chr4:24539475 1.22E-145 dispersed
Lsi04g01720 Lsi-Chr4:24539475 Lsi08g01340 Lsi-Chr8:21702502 0 dispersed
Lsi04g01719 Lsi-Chr4:24524412 Lsi04g01720 Lsi-Chr4:24539475 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1054 Blo01g01587 Blo12g00894 Bda01g00501 Bda03g00277 . Bpe04g00233 Bma04g00235 Bma01g02356 Cmo05g00296 Cmo12g00371 Cma01g01950 . Car01g01524 Car12g00398 . Cpe06g00082 Cpe07g00377 Bhi04g00236 . . . Hepe10g0132 . . Cla08g01439 Cam08g1919 Cec08g1495 . Clacu08g1609 . Cre08g1395 Cone4ag1953 Cone7ag1865 Cone17ag1387 Cone20ag0094 Lsi04g01720 Csa03g04255 Chy04g00439 Cme03g01898 Blo17g00752 Blo18g00784 Bda08g01231 Bda01g01525 Bpe02g01722 Bpe05g00132 Bma01g00734 Bma05g00156 Sed01g2507 Cmo01g02011 Cmo09g00120 Cma12g00422 Cma05g00291 Car05g00240 Car09g00108 Cpe11g00240 Cpe02g00089 Bhi09g02119 Tan01g4988 Cmetu04g2374 . Hepe01g1639 Mch11g0141 . Cla05g01895 Cam05g2031 Cec05g2040 Cco05g2096 Clacu05g2022 Cmu05g1902 Cre05g2026 Lsi08g01340 Csa02g02116 Chy03g01400 Cme04g00495
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000551 5 3 4 6 4 4 4 4 4 3 2 3 4 3 5 4 4 4 4 4 3 3 5 3 2 3 3 5 3 1 109
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01720 Lsi_Chr04 FPKM 16.089743 12.304614 23.575035 22.72694 14.047808 14.448634 11.729983 18.975126 21.629135 19.161905