Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01721 ATGTCTACGCTCGATGCCGGTTCGAAGGTTGAGGAGGTTAAGGAGAAGGAAGAGAAGGCAGGGGAGCTTTTGTTCTGTGGTGCTACCTGTTGGGATATAATTGGTCGGAAAAAAGGTTCCGTCGAAGGCAACTTGGTCTCTCCCACTCGCCTTCGCCCGCTCGTAGGCGTTGACATTCGTTTTGTTGCTGCTGGTTGCAAGTATTCAACTCTGATCCTGCATTGCAGTGAAGTGGTTATTGACGTTTTGAATGTTAATCTTGGCGTAGCATCGTGTCATTGTGTGGCATTGGACGTGGAAGGGCGTTGCTATACCTGGGGACGCAATGAGGCATGTTTACTCTCAACTCTGAAGCTTAAAACCGTTTCGTTTTCCTGTCAATTGGGTCATGGAGATTTGATTCAGCGAGATAGGCCTACTATTGTATCTGACCTTTCGAAGTACAAGGTGGTTAAAGCTGGAGCAGGGAGAAACCACACTGTTGTGGTAACTGAGGATGGAAATTCGCTATCCTTCGGTTGGAACAAACATGGCCAGTTGGGTTCAGAGATTGAGTCATCTCCTGTGCGTTGTCTCGTATCTGAAGTGAAAAATACTGCCTGTGGGGGTGAATTCACCGTGTGGTTATCTTCTATTGAAGGAGCTTCCATACTTACTGCGGGTCTTCCACAGTATGGACAGCTTGGTCATGGAACAGATAACGAGTATAACACAAAGGATAGCTCAGTGAGACTTGCTTATGAAGCCCAACCACGCCCCCGAGCAATTGCTTCCCTTTCTGGAGAAAAAATTGTTAAAGTTGCTTGTGGAACAAATCATACAGTGGCTGTGGATTCTAATGGCTATGTCTACACGTGGGGCTTTGGCGGTTATGGAAGACTTGGGCATAGAGAGCAGAAGGATGAATGGGCCCCTCGACGTGTCGATGTATTCCAGAGGAAAAATACTCTGCCTCCTGATGCTATCATTTCAGCGGGGTCTGTGAACTCTTCTTGTACTGCAGGTGGGGGGCAGCTTTATATGTGGGGAAAAATAAAAAATGCTGGAGATGACTGGATGTATCCGAAACCTCTCATGGATTTAAGTGGATGGAATATAAGATGCATGGATTCGGGCAACATGCACCATTTTGTGGGTGCTGATAACTCGTGCATAAGTTGGGGCCATGCACAATATGGAGAGCTCGGATATGGCCCAATGGGGCAGAAGTCTTCGGCGGTACCCAAAAAGGTTGATATCCTGGAGAACATGCATGTCATAAGTGTTGCATGTGGTGCTGGACACTCTATGGTTGTTGTTGATAGAACAAATGTAGCTGATCGACTTGAACAGCTTGATATATACGATGGCAAAGCTTTTGATGAAGAGAATGCGGTATCGCAAGCGGTACCACAGAGTAAAGGTTCAGCCATCAAGCAAACTCCAAAGCCTGCTAAAGCATCTCAGAATGCCAAGAAGAGGAAGAAATCAAAAGATTCATCTGACTTGGAGGAAGAAGAAGAGGAAAATGAAGATGGTGACAGCAGCGATGAAGAGGCCAATGGGCTATCAGATACGAGTGAACAGTATGGAAGCAAAAGCAAGGGTAGAGGTAGAGGAAAGGGTGGTAAACACTCATCGAGTGGTGGGAAAGGCAGTGGTAGTGGACGGGGTCGTCCCCCATCAAACAACAAGAAACCAGCGGCTTCTCAAGGAAAAGCAGTAGGAGCTAAGAGAGGTAGACCTCGGAAGACATGA 1737 46.92 MSTLDAGSKVEEVKEKEEKAGELLFCGATCWDIIGRKKGSVEGNLVSPTRLRPLVGVDIRFVAAGCKYSTLILHCSEVVIDVLNVNLGVASCHCVALDVEGRCYTWGRNEACLLSTLKLKTVSFSCQLGHGDLIQRDRPTIVSDLSKYKVVKAGAGRNHTVVVTEDGNSLSFGWNKHGQLGSEIESSPVRCLVSEVKNTACGGEFTVWLSSIEGASILTAGLPQYGQLGHGTDNEYNTKDSSVRLAYEAQPRPRAIASLSGEKIVKVACGTNHTVAVDSNGYVYTWGFGGYGRLGHREQKDEWAPRRVDVFQRKNTLPPDAIISAGSVNSSCTAGGGQLYMWGKIKNAGDDWMYPKPLMDLSGWNIRCMDSGNMHHFVGADNSCISWGHAQYGELGYGPMGQKSSAVPKKVDILENMHVISVACGAGHSMVVVDRTNVADRLEQLDIYDGKAFDEENAVSQAVPQSKGSAIKQTPKPAKASQNAKKRKKSKDSSDLEEEEEENEDGDSSDEEANGLSDTSEQYGSKSKGRGRGKGGKHSSSGGKGSGSGRGRPPSNNKKPAASQGKAVGAKRGRPRKT 578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24547985 24555133 + Lsi04G017210.1 Lsi04g01721 661770

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01721 578 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 267 277 IPR000408 -
Lsi04g01721 578 Pfam Regulator of chromosome condensation (RCC1) repeat 218 277 IPR000408 -
Lsi04g01721 578 Pfam Regulator of chromosome condensation (RCC1) repeat 280 314 IPR000408 -
Lsi04g01721 578 Pfam Regulator of chromosome condensation (RCC1) repeat 386 432 IPR000408 -
Lsi04g01721 578 SUPERFAMILY RCC1/BLIP-II 89 435 IPR009091 -
Lsi04g01721 578 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 153 163 IPR000408 -
Lsi04g01721 578 Gene3D - 185 318 IPR009091 -
Lsi04g01721 578 Gene3D - 18 184 IPR009091 -
Lsi04g01721 578 MobiDBLite consensus disorder prediction 496 514 - -
Lsi04g01721 578 MobiDBLite consensus disorder prediction 541 562 - -
Lsi04g01721 578 Gene3D - 319 439 IPR009091 -
Lsi04g01721 578 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 215 280 IPR000408 -
Lsi04g01721 578 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 281 336 IPR000408 -
Lsi04g01721 578 PRINTS Chromosome condensation regulator RCC1 signature 150 163 IPR000408 -
Lsi04g01721 578 PRINTS Chromosome condensation regulator RCC1 signature 169 185 IPR000408 -
Lsi04g01721 578 PRINTS Chromosome condensation regulator RCC1 signature 267 283 IPR000408 -
Lsi04g01721 578 PRINTS Chromosome condensation regulator RCC1 signature 283 297 IPR000408 -
Lsi04g01721 578 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 382 435 IPR000408 -
Lsi04g01721 578 MobiDBLite consensus disorder prediction 459 578 - -
Lsi04g01721 578 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 422 432 IPR000408 -
Lsi04g01721 578 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 101 166 IPR000408 -
Lsi04g01721 578 Pfam Regulator of chromosome condensation (RCC1) repeat 150 179 - -
Lsi04g01721 578 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 167 212 IPR000408 -
Lsi04g01721 578 MobiDBLite consensus disorder prediction 459 480 - -
Lsi04g01721 578 PANTHER PROTEIN RCC2 12 561 IPR028641 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01721 - - - bhj:120086299 902.894
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01721 Lsi-Chr4:24547985 Lsi01g01987 Lsi-Chr1:26473030 4.33E-12 dispersed
Lsi04g01721 Lsi-Chr4:24547985 Lsi02g01993 Lsi-Chr2:25879979 1.41E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1063 . . Bda01g00500 . Bpe02g00362 . . Bma01g02357 . . Cma01g01953 . Car01g01525 . . . . . . . . . . . . . . . . . . . . Cone17ag1389 Cone20ag0092 Lsi04g01721 Csa03g04257 Chy04g00438 . . . . . . . . . . Cmo01g02012 . . . . . . Cpe02g00088 Bhi09g02117 Tan01g4990 . . Hepe01g1636 Mch11g0139 . . . . . . . . . . . Cme04g00492
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010513 1 2 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01721 Lsi_Chr04 FPKM 27.737123 28.837738 37.844322 42.466942 27.209003 28.348827 30.004177 46.518951 46.04932 49.609993