Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01724 ATGGGAGCATCAACATCAATGGAGAAAAAGGTTCCTGATGACCAAAAAGAGGCTGAAGCCTTGGCAGCTTCAACGGGAGCTCTCCCTCAGCTCCAGAGTGCATTCTCTAAGCTGAAATGCTTCTTTTTAGGTTATGAGAACCGAACCCACGAAACATCTGCAGTGCCTGAATCCTTTCTGGCCGTCCTAGATCATGTTGGTTTAACGATTGCTGAACTGTTCTTCATTCCTGAAGAAGGAGGAGTTACCTGGGTTGAATTTCTTAAGGGCTACAACAAATGTTGTGGAAAAATATCTGCATCTGTGTTGCTTAATTCATTAATTAGGGTATTTGATGCTACAATGGTAAAGGTGGGACTCCCTTCAAAATTGGAGTTTACATCCCATGAGGATGAATTTAAGATGAGTGGTTTCCTTCTTCCCAGTGATGTTCTTATGCTTCTTTGGATGTGTTGGACTATGTCTTGGGATTCTAGTACTTCCAAAGTTTTAGGTTTGGCCGTTGAAGTACCCATAGGAAAGTTTCTTACTTGGGCAGTGAAAACTGTTCCAAGTCTTCCAGATGGGTTCTCACGATTTGTACATGCAAGAATTCTTCAAGCTCCTACTCGAGAGGATGGAGTGGAGTCATCAAGTTCATCAGCTGTAGATATTGCCTCACCCGAGACATCGAGTTCATATTGTCTTACCCGTGGAACAGCATGGGCAGTTTCCCTTACACAAAGAGGTGGCATAAGGGAAGAGATATCAAAAATATGTTTTTTGAGCAGTGGGGATGGAAATTATGAACACTTACTTTATAGGTCGTCACTTCATGGGAGAGGCTTGAATAGATTCTGGTCCAATGTGGAAGGTTACCAGGGTCCTTTGTTTGTGGTTGTTCATGCCGTTTCTGGAGACACTCGTGATGATTGCACGAATGAATTGAAATGGACTGTTGGTGTACTGACATTCCAGGGTTTTGAAAATAGGGATCTGTTCTATGGAAGCGGAGGAAATATCTATGCTCTAAGTCCAGTTTTTCATGTATATTCAGCGACTGGGAAGGAAAAGAACTTTGTCTATAGCCACTTGCATCCGTCCGCAAGGGTTTATGAACCACATCCAAAGCCCGTTGGAATTGCATTTGGGGGAAGTACAGGAAATGAGAGAGTATTCATTGATGAAGATTTTGCCAAGGTTACTGTTCGCCATCACGTGGTTGACAAAACTTACCAGCCTGGTCCTCTCTTTCCAGATCAGGGGTTCCTTCCTGTTGAAGCTTCCATTCTAGAAGTGGAAGTTTGGGGATTTGGCGGTTATACAGCTAAGGAAATCCAAAATTCGTACAAAAAGAGAGAGGAACTTTTCACCGAGCAAAGAAGAAAGGTTGATTTGAAAACATTTGCCAGTTGGGAAGATTCACCGGAGAAGATGATGTTAGACATGATGTCGGACCCAAATGCTGTTCGAAGAGAAGACCGTTAG 1467 43.01 MGASTSMEKKVPDDQKEAEALAASTGALPQLQSAFSKLKCFFLGYENRTHETSAVPESFLAVLDHVGLTIAELFFIPEEGGVTWVEFLKGYNKCCGKISASVLLNSLIRVFDATMVKVGLPSKLEFTSHEDEFKMSGFLLPSDVLMLLWMCWTMSWDSSTSKVLGLAVEVPIGKFLTWAVKTVPSLPDGFSRFVHARILQAPTREDGVESSSSSAVDIASPETSSSYCLTRGTAWAVSLTQRGGIREEISKICFLSSGDGNYEHLLYRSSLHGRGLNRFWSNVEGYQGPLFVVVHAVSGDTRDDCTNELKWTVGVLTFQGFENRDLFYGSGGNIYALSPVFHVYSATGKEKNFVYSHLHPSARVYEPHPKPVGIAFGGSTGNERVFIDEDFAKVTVRHHVVDKTYQPGPLFPDQGFLPVEASILEVEVWGFGGYTAKEIQNSYKKREELFTEQRRKVDLKTFASWEDSPEKMMLDMMSDPNAVRREDR 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24570271 24573973 - Lsi04G017240.1 Lsi04g01724 661773

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01724 488 PANTHER TLD-DOMAIN CONTAINING NUCLEOLAR PROTEIN 1 163 - -
Lsi04g01724 488 Pfam TLD 265 432 IPR006571 -
Lsi04g01724 488 PANTHER NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED 1 163 - -
Lsi04g01724 488 PANTHER TLD-DOMAIN CONTAINING NUCLEOLAR PROTEIN 161 475 - -
Lsi04g01724 488 PANTHER NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED 161 475 - -
Lsi04g01724 488 SMART 109ultra 242 432 IPR006571 -
Lsi04g01724 488 ProSiteProfiles TLDc domain profile. 235 432 IPR006571 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01724 - - - csv:101217301 882.863
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1075 Blo01g01589 . Bda01g00498 . Bpe02g00360 . . . . . Cma01g01957 . Car01g01528 . . . . . . . . . . . . . . . . . . . . Cone17ag1392 Cone20ag0090 Lsi04g01724 Csa03g04261 Chy04g00435 . . . . . . . . . Sed13g1589 Cmo01g02015 . . . . . . Cpe02g00085 Bhi09g02111 Tan01g4994 Cmetu04g2269 . Hepe01g1633 Mch11g0136 . Cla05g01892 Cam05g2026 Cec05g2035 Cco05g2093 Clacu05g2017 Cmu05g1897 Cre05g2021 . . . Cme04g00488
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009851 1 4 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01724 Lsi_Chr04 FPKM 4.226433 3.969958 1.154367 1.478255 0.797739 0.448703 0.63599 1.694143 1.308544 1.774205