Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01726 ATGGGCTCTGTGGAAGAGAAGCTCAAGACATCAGGGGGTTTGATTAATAACGGCCCACAGACTAACCTTCTCGACGAGATGAAGTTGTTGAAAGAAATGCAAGATCAAACAGGGGCCCGGAAGGCTATAAACTCCGAGCTATGGCACGCTTGTGCAGGTCCGCTTGTTTCCTTGCCCCATGTGGGTACTCTTGTTTATTACTTTCCTCAGGGACATAGTGAACAGGTGGCAGTTTCTACCAAGAGAACAGCAACCTCACAGATTCCAAATTATCCTAATCTTCCCTCTCAGTTGATGTGCCAAGTTCAAAATGTTACCTTACATGCCGATAAAGATTCAGATGAAATCTATGCTCAAATGAGTCTTCAACCAGTGAACTCTGAAAAAGATGTCTTCCTTGTTCCGGACTTTGGACTAAGGCCGAGTAAACACCCAAATGAGTTCTTCTGCAAAACTTTAACCGCCAGTGACACCAGCACACATGGTGGGTTCTCAGTACCACGCAGGGCCGCTGAAAAACTCTTTCCTCCATTGGTAAGGTTTTCAACTCCATGTCATTTCTTCCCTGCCGATTACACAATGCAACCGCCAACTCAGGAGCTTGTTGTTAGAGACTTGCATGACAATACCTGGACTTTTCGCCACATTTATCGCGGTGAGTATGCTTTGATATCATATGATTGTCACAGGCAGCCGAAGCGACACCTTCTCACAACTGGGTGGAGTCTATTCGTTGGGGCAAAGAGGCTTAGAGCAGGCGATTCTGTCCTTTTTATAAGGGATGAAAAGTCCCAGTTGCTTATTGGAGTGAGGCGTGCTAACAGGCAACAAACAACATTGCCATCATCGGTTCTATCTGCTGATAGTATGCATATTGGGGTTCTTGCTGCTGCGGCTCATGCTGCTGCTAATCGAAGTCCATTTACAATCTTCTACAACCCCAGGGCATGTCCTTCAGAATTTGTTATTCCTTTAGCCAAGTATCGCAAATGTGTATACGGAACTCAGCTTTCTGCAGGCATGAGGTTCGGGATGATGTTTGAAACAGAAGAGTCCGGTAAACGCCGATATATGGGTACAATTGTTGGGATTAGCGATTTAGATCCACTTAGGTGGCCTGGTTCCAAGTGGCGAAATCTTCAGGTAGAGTGGGATGAGCCAGGATGCTGCGATAAGCAGAACAGGGTTAGTTCATGGGAAATAGAAACTCCAGAAAGTCTATTCATTTTTCCTTCTCTGACTTCAGGTCTTAAACGTCCATTACACGGTGGATTTTTGGGAGAAACTGACTGGGGAAGTCTGGTGAAGAGACCAATGCTTCGTGTTCCTGAAAATATACGTGGGGATCTTTCATATGCGCCAACTTTATGCTCTGAACCACTGATGAAGATGCTACTGCGGCCTCAAATGGTTAACCTTCACGGAACCACCTTACAGCAGGATTCGGTTAACAATTTAGTTAAGATACAGGACATGAAGGACATGCAGCCAGTAACCAAAATGCAGCAGCTTATACCATTAGAAACTGCATCTCCCGGGATTCAAAATCATCATCATCATCCAGCACCTACACAATCTGATGCCATAAACCCAAATTCATCACCAAAAGAAAATCTACCAGGAAAACTAAACACTTCGGGGGCCATTGAAAGTGAAGCTCCAAATGCAGCTGATGTAGACAAGGCGAAATACGAACGTGATCTTTCAACCAATCAGTCCAATCCATTGCCCTCAGTCGGAGATTGTGGGGAGGAAAAACTCACTGGCAACGAAGTGAATATGCAAACGCTTGCAAACCAGCTTTCATTTGTGAACCAGAACCAGATCCCCATGCAGTTGCAATCCGTATCATGGCCCATGCAGCCACAGCTTGAATCACTAATCCAACACCCACAGCCAATTGACATACCTCAGCCTGAATTTACGAATTCCAATGGTTTGATTTCATCCTTGGATGGCGATGGATGTTTGATTAACCCATCCTGTCTGCCTCTTCCTGGAGTAATGAGATCACCAGGGAATCTTTCCATGTTGGGATTGCAAGATTCTTCAACAGTCTTTCCTGAGGCTTTTAATTTCTCCTTACCCTCAACAGGCCAAGACATGTGGGATCCTCTTAATAATATAAGGTTCTCATCTCAAACCAATCATCTCGTCTCATTCTCTCATCCAGACGCAACTAACCTCAACTGTATGGCTAATGCAAATATTATGAGAGATGTTTCAGATGAAAGCAACAACCAAAGTGGGATATACAGTTGTTCTAACCTTGAAATCAGTAACGGTGGAAGTACTTTGGTTGATCATGCTGTTTCAAGTACTATTCTTGATGATTATTGCACATTGAAAGATGCTGACTTCCCTCATCCTTCAGATTGCTTGGCTGGGAACTTCAGTTCGAGCCAAGATGTTCAGTCTCAGATCACCTCTGCTAGTCTGGGAGATTCTCAGGCTTTCTCCAGGCAAGAGTTCCATGATAATTCAGGTGGTACATCCTCATGCAATGTGGATTTTGATGAGGGCAGTCTTCTGCAGAATGGCTCATGGAAGCAAGTGGTACCGCCCTTGAGAACTTACACTAAGGTCCAGAAGGCGGGATCTGTTGGGAGATCTATTGATGTCACTAGTTTTAAGAACTACGACGAACTGTGCTCTGCTATCGAATGTATGTTCGGACTTGAAGGGTTGCTTAATGACCCAAGAGGGTCGGGATGGAAACTGGTTTATGTGGATTATGAGAACGACGTCCTGCTTATTGGTGATGATCCGTGGGAGGAATTTGTTAGCTGTGTACGGTGTATCAGAATCTTGTCACCTTCAGAAGTTCAGCAAATGAGTGAAGAGGGAATGAAGCTTCTCAACAGTGCTATGATGCAAGGCATCAATTGCTCCATGTCAGAAGGTGGCCGAGCTTAA 2916 44.79 MGSVEEKLKTSGGLINNGPQTNLLDEMKLLKEMQDQTGARKAINSELWHACAGPLVSLPHVGTLVYYFPQGHSEQVAVSTKRTATSQIPNYPNLPSQLMCQVQNVTLHADKDSDEIYAQMSLQPVNSEKDVFLVPDFGLRPSKHPNEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLVRFSTPCHFFPADYTMQPPTQELVVRDLHDNTWTFRHIYRGEYALISYDCHRQPKRHLLTTGWSLFVGAKRLRAGDSVLFIRDEKSQLLIGVRRANRQQTTLPSSVLSADSMHIGVLAAAAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKCVYGTQLSAGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQVEWDEPGCCDKQNRVSSWEIETPESLFIFPSLTSGLKRPLHGGFLGETDWGSLVKRPMLRVPENIRGDLSYAPTLCSEPLMKMLLRPQMVNLHGTTLQQDSVNNLVKIQDMKDMQPVTKMQQLIPLETASPGIQNHHHHPAPTQSDAINPNSSPKENLPGKLNTSGAIESEAPNAADVDKAKYERDLSTNQSNPLPSVGDCGEEKLTGNEVNMQTLANQLSFVNQNQIPMQLQSVSWPMQPQLESLIQHPQPIDIPQPEFTNSNGLISSLDGDGCLINPSCLPLPGVMRSPGNLSMLGLQDSSTVFPEAFNFSLPSTGQDMWDPLNNIRFSSQTNHLVSFSHPDATNLNCMANANIMRDVSDESNNQSGIYSCSNLEISNGGSTLVDHAVSSTILDDYCTLKDADFPHPSDCLAGNFSSSQDVQSQITSASLGDSQAFSRQEFHDNSGGTSSCNVDFDEGSLLQNGSWKQVVPPLRTYTKVQKAGSVGRSIDVTSFKNYDELCSAIECMFGLEGLLNDPRGSGWKLVYVDYENDVLLIGDDPWEEFVSCVRCIRILSPSEVQQMSEEGMKLLNSAMMQGINCSMSEGGRA 971
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24579151 24585071 - Lsi04G017260.1 Lsi04g01726 661775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01726 971 MobiDBLite consensus disorder prediction 518 551 - -
Lsi04g01726 971 Pfam Auxin response factor 298 381 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lsi04g01726 971 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 30 961 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lsi04g01726 971 ProSiteProfiles PB1 domain profile. 857 941 IPR000270 GO:0005515
Lsi04g01726 971 SUPERFAMILY CAD & PB1 domains 859 936 - -
Lsi04g01726 971 ProSiteProfiles B3 DNA-binding domain profile. 149 274 IPR003340 GO:0003677
Lsi04g01726 971 Pfam AUX/IAA family 858 944 IPR033389 -
Lsi04g01726 971 SUPERFAMILY DNA-binding pseudobarrel domain 136 301 IPR015300 -
Lsi04g01726 971 CDD B3_DNA 148 272 IPR003340 GO:0003677
Lsi04g01726 971 SMART B3_2 149 274 IPR003340 GO:0003677
Lsi04g01726 971 Gene3D - 336 408 - -
Lsi04g01726 971 MobiDBLite consensus disorder prediction 511 586 - -
Lsi04g01726 971 PANTHER AUXIN RESPONSE FACTOR 5 30 961 - -
Lsi04g01726 971 Pfam B3 DNA binding domain 149 273 IPR003340 GO:0003677
Lsi04g01726 971 Gene3D - 147 273 IPR015300 -
Lsi04g01726 971 Gene3D - 854 946 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01726 Lsi-Chr4:24579151 Lsi11g00146 Lsi-Chr11:1625449 2.11E-35 dispersed
Lsi09g00876 Lsi-Chr9:10198003 Lsi04g01726 Lsi-Chr4:24579151 2.88E-31 dispersed
Lsi04g01726 Lsi-Chr4:24579151 Lsi01g00116 Lsi-Chr1:1225345 3.02E-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25223 PF02362 B3 4.40E-16 CL0405 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01726 K14486 - csv:101216825 1809.65