Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01729 ATGGTGCGACGCCAATTGTTTTCTGGAGTTAATGATCTTCGTCTAGCAATGCCTGAAATGGACCGACGAAGTTGGCCCTGGAAGAAGAAATCATCTGAGAAGACAGCAGAGAAGGCCAATGCATCGGAGTCGGCTGGAAGTCAGGGTGATCAGGATGGATATAAAAAACCAAGTTATGTACAAATCTCTGTTGAGTCGTATTCACATCTTACCGGTTTGGAGGATCAAGTAAAAACACGCGATGAACAAATCCAGACACTGGAGGGTGAGATTAAAGAGCTCAATGAGAAACTATCAGCTGCACACTCAGAGATGACTACCAAGGACAACCTAGTAAAACAGCATGCTAAAGTTGCTGAAGAAGCTGTCTCAGGTTGGGAGAAAGCTGAAGCAGAAGCTCTGGCATTAAAAAATCATTTAGAGACTGTGACACTGTCCAAACTCACTGCTGAAGATCGGGCATCACATTTGGATGGTGCTCTGAAGGAATGCATGAGACAGATAAGAAATCTGAAAGAAGAACATGAACATAAATTGCAAGAAGTTATTTTCACCAAGACTAAGCAGTGGGACAAAGTTAAACTTGAGTTGGAATCAAAAATGGCAGACTTGGACCAAGAACTTCTTAGGTCTGCTGCTGAAAGTGCTGCACTTTCAAGGTCATTACAAGAACGTTCCAACATGCTGATTAAAATAAGTGAAGAAAAGTCACAAGCTGAGGCCGAGATTGAGATGCTGAAGGGCAACATTGAATCATGTGAAAGAGAAATAAATTCACTTAAATACGAATTACATATAGTTTCCAAGGAGCTAGAAATCCGTAATGAAGAAAAGAATATGAGTATGAGGTCTGCTGAAGCAGCCAACAAGCAGCACATGGAAGGTGTTAAGAAAATAACAAAACTGGAAGCAGAATGTCAAAGGTTACGTGGTCTTGTGCGGAAGAAATTGCCTGGTCCTGCTGCACTTGCGCAAATGAAGCTAGAGGTTGAAAGTTTAGGCAGGGAATATGGCGACACCCGAGTAAGGAAGTCCCCTAGTAGGCCTCCATCTCCACATATGTTATCTGTGCCTGACTTTTCCCTTGATAATGCATTGAAATTCCAAAAGGAGAATGAGTTCCTCACGGAACGAATGTTAGCCATGGAGGAGGAAACAAAGATGCTTAAAGAGGCTTTGGCAAAGCGTAATAGTGAGTTGCAGACTTCCAGGAGTATGTGTGCCAAGACAGCTAGTAAACTTCAAAATTTAGAGGCACAACTCATAAATGGCAATCACCAAAGAAGCTCCCCAAAGTCTGTTGTTCAGTACACTGCCGATGGCTTTTCATGCCAAAACACAAGCCATCCTCCCAGCTTGACCTCTATGTCTGAAGATGGAAATGAGGATGGCCAGAGCTGTGCAGATTCTCTATCCATAGCAGCAACCTCTGACATTTCCCACTTTAGGGAGAAGAGGAATGAGAAATTAAGTAAAACTGAAAGTGGAAGTCACTTGGGACTTATGGATGACTTTCTGGAAATGGAAAAATTGGCATGCCAATCAAATGAGTCAAGCGAAGCCATCCTTGCTTCAGATAGTTCAAACAATAAGGCCTCTGAAGTTGTACACCAGGAGTCCAATGGTATCCAGTCCGAACAGCATCTGGATTCCAGTCCATCTACAGATGTTGTATCTTCTACTCATGATTTGTCAACAGAGCATGGTGATTCCAATGGGTTGCCTTTAATGAAACTCCGATCAAGAATATCTATGATTTTTGAGTCTATTTCAAAGGATGCGGATACTGGAAAAGTTTTGGAGGATATTAAATGCATTGTTCAAGATGCTCATGATGCACTTCAGCAACCCACTGTCAGTTGTTTGAGCTGTGTTTCTGAAGTGCAATGTCCTGATACGACATGTGATAGGCAAGCCAATCCGGATGATGCTGGTTTAGGAGTAGAAAGAGAAATTGCTTTATCTCAGCCTGCTACACACAATCAGCCTATGAGCCAAGAGCTGGAAGCTGCCATCTCTCAAATTCATGAATTTGTGCTGTTTCTTGGGAAAGAAGCCTCCAGAGTTCATGACACGGTATCTCCTGATGGGCATGGACTGGGTCAAAAAGTTGAGGAATTCTCAGCCACCTTTAGTAAAATTGTGCATGCGAACACAAGTTTGGTGGACTTTGTTATTATTCTATCTCATGTTTTATCTGAAGCCAGTGAGCTCAGATTTAGTTTCATTGGATGCAAGGATACCGATGGAGATACTAATAGTCCTGATTGCATAGACAAGGTAGCTTTACCAGAGCACAAGGTTGTCCAAAATGACTCACTGGACGAAAGATATACCAACGGTTGTTCCCATATTTCTAGTCCAACTTCTGATATCGAAGTTCCTTATGATGGAAATCTAGTCTCCAGCTATGAATCAAATTCCAGATTACCCAAACTCTCATCAGAGGACATTGAAGAGCTAAAATTAGCCAAGGAGAACCTGTCAAAGGACTTGGCAAGATCTACAGAGGACCTTGAGGCAACCAAACGTAAACTGCAGGAAACAGAGCAGCTGCTAGCAGAATCTAGATCACAGTTGGCTTTTGCTCAAAAGTCAAACAGCTTATCAGAAACACAGCTGAAATGTATGGCAGAGTCATACAGGTCACTTGAAGCACGTGCAGAGGATTTGGAAACCGAACTAAATTTGTTGCGAGCTAAATCTGAAGCTTTGGACAATGATCTTCAAGATGAGAAGAGGAATCATCACGAAGCTTTGTCCAAGTGCCAGGAGCTTCAAGAGAAACTACAGAGTTCGTCTCCAATACTAATTTTCATCTCCTCTGTCCTGCATTGCAGGAATGAGGTTTGCTGCGCTATTTGTTCTTCAGCTATTGATAGTGATCCCCAGAAGAGCCAGAAACGCTCTAGAATTATCATCATAACATATTCAGGAATGAATGAGCGTGAAGAAAAAGCAGAGATAGAGTTGACTGCTGCTGCAGAGAAGTTGGCAGAATGTCAAGAAACAATTTTTCTTCTTAGCAAGCAGTTGAAATCTCTTCGACCTCAACCAGATTTTGGTGGATCTCCATTCAGCGAGAGAAGTCAAAGAGGTGAAGAGTTCATCGATGACGAACCACCATCTAAAAGTGGCACCAATCTTCTGGACCTTGATAGGTCCGAAATGGATACTGCCACTTCTGCGATGATGCCGGTAGTCGGTGCAGAATCCCCTTGTAGTGGTTCCGATGGCGAAGGAGGAAGCTTCTTGAGATCACCTATCAATTCAAAACATCCAAAACACAGGCCAACTAAATCAAGCTCCTCTTCTTCCTCCTCCGCTCCAACTCCAGAGAAACAGACTCGAGGATTTAGTAGATTCTTCTCCTCGAAAGGAAAGATCAACAACAGTCATTAG 3402 42.71 MVRRQLFSGVNDLRLAMPEMDRRSWPWKKKSSEKTAEKANASESAGSQGDQDGYKKPSYVQISVESYSHLTGLEDQVKTRDEQIQTLEGEIKELNEKLSAAHSEMTTKDNLVKQHAKVAEEAVSGWEKAEAEALALKNHLETVTLSKLTAEDRASHLDGALKECMRQIRNLKEEHEHKLQEVIFTKTKQWDKVKLELESKMADLDQELLRSAAESAALSRSLQERSNMLIKISEEKSQAEAEIEMLKGNIESCEREINSLKYELHIVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKITKLEAECQRLRGLVRKKLPGPAALAQMKLEVESLGREYGDTRVRKSPSRPPSPHMLSVPDFSLDNALKFQKENEFLTERMLAMEEETKMLKEALAKRNSELQTSRSMCAKTASKLQNLEAQLINGNHQRSSPKSVVQYTADGFSCQNTSHPPSLTSMSEDGNEDGQSCADSLSIAATSDISHFREKRNEKLSKTESGSHLGLMDDFLEMEKLACQSNESSEAILASDSSNNKASEVVHQESNGIQSEQHLDSSPSTDVVSSTHDLSTEHGDSNGLPLMKLRSRISMIFESISKDADTGKVLEDIKCIVQDAHDALQQPTVSCLSCVSEVQCPDTTCDRQANPDDAGLGVEREIALSQPATHNQPMSQELEAAISQIHEFVLFLGKEASRVHDTVSPDGHGLGQKVEEFSATFSKIVHANTSLVDFVIILSHVLSEASELRFSFIGCKDTDGDTNSPDCIDKVALPEHKVVQNDSLDERYTNGCSHISSPTSDIEVPYDGNLVSSYESNSRLPKLSSEDIEELKLAKENLSKDLARSTEDLEATKRKLQETEQLLAESRSQLAFAQKSNSLSETQLKCMAESYRSLEARAEDLETELNLLRAKSEALDNDLQDEKRNHHEALSKCQELQEKLQSSSPILIFISSVLHCRNEVCCAICSSAIDSDPQKSQKRSRIIIITYSGMNEREEKAEIELTAAAEKLAECQETIFLLSKQLKSLRPQPDFGGSPFSERSQRGEEFIDDEPPSKSGTNLLDLDRSEMDTATSAMMPVVGAESPCSGSDGEGGSFLRSPINSKHPKHRPTKSSSSSSSSAPTPEKQTRGFSRFFSSKGKINNSH 1133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24643241 24648775 + Lsi04G017290.1 Lsi04g01729 661778

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01729 1133 Coils Coil 194 214 - -
Lsi04g01729 1133 MobiDBLite consensus disorder prediction 1017 1050 - -
Lsi04g01729 1133 PANTHER FILAMENT-LIKE PLANT PROTEIN 4 981 1128 - -
Lsi04g01729 1133 PANTHER FILAMENT-LIKE PLANT PROTEIN 4 20 932 - -
Lsi04g01729 1133 Pfam Filament-like plant protein, long coiled-coil 980 1019 IPR008587 -
Lsi04g01729 1133 Pfam Filament-like plant protein, long coiled-coil 108 933 IPR008587 -
Lsi04g01729 1133 Coils Coil 818 866 - -
Lsi04g01729 1133 Coils Coil 229 288 - -
Lsi04g01729 1133 Coils Coil 365 392 - -
Lsi04g01729 1133 MobiDBLite consensus disorder prediction 519 568 - -
Lsi04g01729 1133 Coils Coil 154 181 - -
Lsi04g01729 1133 MobiDBLite consensus disorder prediction 519 573 - -
Lsi04g01729 1133 Coils Coil 70 104 - -
Lsi04g01729 1133 Coils Coil 984 1004 - -
Lsi04g01729 1133 PANTHER FILAMENT-PLANT-LIKE PROTEIN 981 1128 - -
Lsi04g01729 1133 PANTHER FILAMENT-PLANT-LIKE PROTEIN 20 932 - -
Lsi04g01729 1133 MobiDBLite consensus disorder prediction 1100 1133 - -
Lsi04g01729 1133 MobiDBLite consensus disorder prediction 20 37 - -
Lsi04g01729 1133 MobiDBLite consensus disorder prediction 1068 1133 - -
Lsi04g01729 1133 MobiDBLite consensus disorder prediction 20 55 - -
Lsi04g01729 1133 Coils Coil 874 929 - -
Lsi04g01729 1133 MobiDBLite consensus disorder prediction 441 468 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01729 - - - csv:101217886 1931.38
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g01729 Lsi08g00434 CCT
Lsi04g01729 Lsi08g00434 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01729 Lsi-Chr4:24643241 Lsi10g00525 Lsi-Chr10:7503788 1.20E-76 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g262 . Blo12g00890 . Bda03g00283 . . Bma04g00240 . Cmo04g02471 . . . . . . Cpe06g00076 . . . . . . . . Cla08g00588 Cam08g1003 Cec08g0593 Cco08g0702 Clacu08g0712 . Cre08g0523 . Cone7ag1530 Cone17ag1283 Cone20ag0443 Lsi04g01729 . . . . Blo18g00184 . . . . . . . . . . . Car04g02288 Car09g00102 Cpe01g02050 . . . . . . . . . . . . . . . Lsi08g00434 . . .
Vvi18g1082 Blo01g01590 Blo12g00890 Bda01g00496 Bda03g00283 Bpe02g00358 Bpe04g00239 Bma04g00240 Bma01g02360 . Cmo15g00692 Cma01g01963 Cma09g00113 Car01g01534 . . Cpe06g00076 Cpe13g00617 . . . . . . . Cla08g00588 Cam08g1003 Cec08g0593 Cco08g0702 Clacu08g0712 . Cre08g0523 Cone4ag1962 Cone7ag1876 . . Lsi04g01729 Csa03g04266 Chy04g00430 . . . . . . . . . Sed01g2501 Cmo01g02021 Cmo09g00111 . . . Car09g00102 . Cpe02g00080 Bhi09g02102 Tan01g5000 . . Hepe01g1627 Mch11g0131 . Cla05g01887 Cam05g2020 Cec05g2031 Cco05g2087 Clacu05g2011 Cmu05g1892 Cre05g2017 Lsi08g00434 . . Cme04g00482
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003482 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 5 2 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01729 Lsi_Chr04 FPKM 7.946135 9.827924 12.395705 10.623896 11.671041 11.267683 11.077024 12.123064 12.799335 13.775643