Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01739 ATGGCACTCTTAACTAATTCCTCTACTACTGACCACAAGAAACCACTCCGTAATAAACGCCGGAAAAAACACCCAAATCCAACCCCGCCACCCTCTAATTCCGGTCAATCCTCATGGGACCATTTCAAGAATCTCATCACCTGCAAACAGGTTGAGGTTTCGAGATCAGTTCAGGAGCCGGCGAAACGGTCACCGGCGTATTCGAAATTGGGGTCTTCTTGCAGTTCTATATGTAGCTTTAGAGATGTGGTTCATGGCAATGCTAAAGTGGTTCACAGAGCCGACAACTCACCGGAAAGCAGCTCCGTTGGACAGGAAACCAGGTTGCTTACTAGAAAACCTGCTAACGGTTCTTCTTCCTCTCGTTCTTTAACGGCGCCGACCTCCGCCAGAACTAAAAACGCTGCTGCTTCGGCTTCTTATAATTCCTCGTCTTCTAGAGGATTACAATTACGAAAGCTTTCTGGGTGTTATGAATGCCACACCATCGTTGACCCTACCAGTTCTTTATGCCCTTGTCCACAGTGTGGAGAGGTCTTCCCTAAGATGGAAAGCCTAGAGCTTCACCAATTAGTTCGCCACGCTGTATCGGAATTGGGTCCTGACGATTCGGGTCGAAACATTGTGGAGATTATTTTCAAATCAAGCTGGCTAAAAAAGGACCGTCCAATTTGCAAGATCGAACGGATATTAAAGGTCCACAATACCCAACGCACTATCCAACGGTTTGAGGATTGCCGTGACGCAGTCAAGACACGTGCTCTCGGAAGCACCAGAAAAAACCCGCGATGTGCGGCTGACGGTAATGAGCTGTTGCGGTTCCACTGTAGCGCCTTGTGGTGTGACCTCGGCTCACGTGGCTCAACCGGCTTGTGCGGCTCGATTCCCGGCTGCGGTGTCTGTAGTGTAATTCGTCATGGGTTCCAGTGTAAGCCCGGTGGTCCCCCTGGTGTACGGACCACCGCTAGTAGTGGTAGGGCCCACGATTCGTTTGAATGCGACGACGGAAGACGACGGGCGATGTTGGTGTGCCGTGTCATCGCCGGGAGAGTGAAGCGGATCTCGGAGGATGCTACGACAGCGACAGCGACAGCGACGGAGGAGGAGAATGTGTCGGCGGCGGCAGCATCATACGACTCCGTTTCACGACACGCCGGGATGTACTCGAATCTCGAGGAGTTGATCATTTTCAATCCAAAGGCTATCCTTCCTTGTTTCGTTGTCATCTATGAAGCGCTCCAAACCTAA 1248 51.2 MALLTNSSTTDHKKPLRNKRRKKHPNPTPPPSNSGQSSWDHFKNLITCKQVEVSRSVQEPAKRSPAYSKLGSSCSSICSFRDVVHGNAKVVHRADNSPESSSVGQETRLLTRKPANGSSSSRSLTAPTSARTKNAAASASYNSSSSRGLQLRKLSGCYECHTIVDPTSSLCPCPQCGEVFPKMESLELHQLVRHAVSELGPDDSGRNIVEIIFKSSWLKKDRPICKIERILKVHNTQRTIQRFEDCRDAVKTRALGSTRKNPRCAADGNELLRFHCSALWCDLGSRGSTGLCGSIPGCGVCSVIRHGFQCKPGGPPGVRTTASSGRAHDSFECDDGRRRAMLVCRVIAGRVKRISEDATTATATATEEENVSAAAASYDSVSRHAGMYSNLEELIIFNPKAILPCFVVIYEALQT 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24718482 24721552 + Lsi04G017390.1 Lsi04g01739 661788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01739 415 MobiDBLite consensus disorder prediction 91 142 - -
Lsi04g01739 415 SUPERFAMILY ADP-ribosylation 196 411 - -
Lsi04g01739 415 MobiDBLite consensus disorder prediction 94 142 - -
Lsi04g01739 415 Gene3D - 195 412 - -
Lsi04g01739 415 ProSitePatterns Zinc finger C2H2 type domain signature. 171 194 IPR013087 -
Lsi04g01739 415 ProSiteProfiles Zinc finger C2H2 type domain profile. 171 199 IPR013087 -
Lsi04g01739 415 PANTHER BNAC02G23540D PROTEIN 24 413 - -
Lsi04g01739 415 MobiDBLite consensus disorder prediction 1 39 - -
Lsi04g01739 415 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 24 413 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01739 Lsi-Chr4:24718482 Lsi09g01047 Lsi-Chr9:15707830 9.97E-104 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25224 None None None None Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01739 - - csv:101222539 714.531