Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01742 ATGTCGGTCGCCGCCGTTGGATCTTTCTCTCTACTAAGATCTCCGAGGTGGACGGGCCGCCCTCGCTTCACCATGGCCGTCCGATCCAAAGCGGTCTCTGTTTCCCCAATTTTGACTAAGTTTCAGAAGGATTGCGACACCCCTTTGCCGGTATTGCGCCACGTGGCCGATTCAATGGCCAATGCTATGCGAGCTGGGCTTGCCATCGACGGCGGCAGCGATCTCAAAATGATTCTTAGCTATGTCGACACTCTCCCTAGTGGGAATGAGGAAGGGTTGTTTTATGCATTGGATCTTGGTGGCACTAATTTTCGAGTGCTTAGAGTTCAATTGGGTGGCAAAGAAGAACGTGTTATTGCCACTGAATTTGAACAAGTTTCGATTCCTCAACACATGATGTTTGCCACATCTCAGCATCATCTGTTGACAATGAACTTTCTTGTTGTTCTGAAGGAGCTCTTTGATTTCATTGCTTCTGGTCTGGAAAAATTTGTAGAGAGTGAAGGTGACAGATTCCACCTTTCTCCTAGAAGAAAGAGAGAGATTGGATTCACATTCTCATTCCCTGTGAAACAAACTTCCATTGATTCTGGCATATTAATCAAGTGGACTAAAGGTTTTGCTGTTTCTGGAGTGGCTGGGAAAGATGTTGTTGCTTGTCTAAATGAAGCCATGGAAAGGCGAGGACTAGATATGCGTGTTTCGGCCCTTGTTAACGACACAGTTGGAACTTTGGCTGGAGCAAGATACTATGATGACGATGTTGTGGCTGCTGTGATTTTAGGTACAGGAACCAATGCCTGTTATATAGAACGAAAGAATGCTATTCCTAAGCTGCAAGGTCAGCCATATTCGTCAGGGAAAACAATTATCAACACAGAGTGGGGAGCATATTCAAATGGTCTTCCTCTTACTGTTTTTGATAGAGAGATGGATGCTGCCAGTATCAATCCCGGGGAGCAGGTGAATCGTCGTTTAATTACGTCGATACGACGTTGTAATTTTGGGGCTAATATCCTTGAGAAGACAATAGCTGGAATGTACCTTGGTGAAATTGCTCGTAGAGTGCTTTTGGCAATGGCTGAATTCTCCCCTCTTTTTGGCAATTCCATTCCTGAAAAGTTGTCGACGCATTTCACCCTCAGGTATCGTTTACAGCTGATCCGTCATTCATATGTCCTCATGACGAAATCATTTAAAAACATGTTCAATGTGTATGTAAGAACTGAAGCATTGAACAAATCTTCCCTTGTAATCACACCAGATCTATGTGCCATGCAGCAAGATGTCTCCAATGACCTCCAAGCCGTTGGATCAATCTTGTACAACGTCTTCGGGGTCGAGTCGGATTTAAGTGCAAGAAAAATCGTCGTAGAGGTGTGCGACACGATTGCAAAGCGAGGGGGGCGATTGGCAGGGGCGGGAATTGTAGGAATTCTAGAGAAGATTGAAGATTTTGAAGATGTAAAGGTTGGAAAGAGGAGAGTTGTGGCCATGGATGGAGGATTATATGAGAATTATCCACAGTACAGAAGGTACCTTAAAGAAGGAGTAACAGAACTTTTGGGGACAGAATTGGCTAAGAATGTGGCCATTGAACATACCAAAGATGGCTCTGGCATTGGAGCTGCTCTTTTGGCTGCTTCAAACTCTATTTATAGAACATGA 1668 44.48 MSVAAVGSFSLLRSPRWTGRPRFTMAVRSKAVSVSPILTKFQKDCDTPLPVLRHVADSMANAMRAGLAIDGGSDLKMILSYVDTLPSGNEEGLFYALDLGGTNFRVLRVQLGGKEERVIATEFEQVSIPQHMMFATSQHHLLTMNFLVVLKELFDFIASGLEKFVESEGDRFHLSPRRKREIGFTFSFPVKQTSIDSGILIKWTKGFAVSGVAGKDVVACLNEAMERRGLDMRVSALVNDTVGTLAGARYYDDDVVAAVILGTGTNACYIERKNAIPKLQGQPYSSGKTIINTEWGAYSNGLPLTVFDREMDAASINPGEQVNRRLITSIRRCNFGANILEKTIAGMYLGEIARRVLLAMAEFSPLFGNSIPEKLSTHFTLRYRLQLIRHSYVLMTKSFKNMFNVYVRTEALNKSSLVITPDLCAMQQDVSNDLQAVGSILYNVFGVESDLSARKIVVEVCDTIAKRGGRLAGAGIVGILEKIEDFEDVKVGKRRVVAMDGGLYENYPQYRRYLKEGVTELLGTELAKNVAIEHTKDGSGIGAALLAASNSIYRT 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24736159 24739278 + Lsi04G017420.1 Lsi04g01742 661791

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01742 555 Gene3D - 387 536 - -
Lsi04g01742 555 PANTHER HEXOKINASE-LIKE 1 PROTEIN-RELATED 15 553 - -
Lsi04g01742 555 Pfam Hexokinase 257 548 IPR022673 GO:0005524|GO:0005975|GO:0016773
Lsi04g01742 555 PRINTS Hexokinase family signature 95 111 - -
Lsi04g01742 555 PRINTS Hexokinase family signature 257 271 - -
Lsi04g01742 555 PRINTS Hexokinase family signature 464 480 - -
Lsi04g01742 555 PRINTS Hexokinase family signature 182 207 - -
Lsi04g01742 555 PRINTS Hexokinase family signature 234 250 - -
Lsi04g01742 555 Gene3D - 537 547 - -
Lsi04g01742 555 Gene3D - 80 250 - -
Lsi04g01742 555 Gene3D - 58 382 - -
Lsi04g01742 555 SUPERFAMILY Actin-like ATPase domain 28 252 IPR043129 -
Lsi04g01742 555 ProSiteProfiles Hexokinase domain profile. 32 548 IPR001312 GO:0001678|GO:0004396|GO:0005524|GO:0005536|GO:0005975
Lsi04g01742 555 ProSitePatterns Hexokinase domain signature. 182 207 IPR019807 GO:0004396|GO:0005524|GO:0006096
Lsi04g01742 555 CDD NBD_sugar-kinase_HSP70_actin 96 271 - -
Lsi04g01742 555 PANTHER HEXOKINASE 15 553 IPR001312 GO:0001678|GO:0004396|GO:0005524|GO:0005536|GO:0005975
Lsi04g01742 555 SUPERFAMILY Actin-like ATPase domain 255 551 IPR043129 -
Lsi04g01742 555 Pfam Hexokinase 38 250 IPR022672 GO:0005524|GO:0005975|GO:0016773
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01742 K00844 HK; hexokinase [EC:2.7.1.1] - csv:101216058 853.203
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01742 Lsi-Chr4:24736159 Lsi06g00221 Lsi-Chr6:2502484 9.97E-170 dispersed
Lsi04g01742 Lsi-Chr4:24736159 Lsi11g00222 Lsi-Chr11:2273192 4.38E-171 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1105 . Blo12g00884 . . . Bpe04g00247 Bma04g00247 . . . . Cma09g00105 . . . Cpe06g00068 . . . . . . . . . . . . . . . . Cone7ag1884 . . Lsi04g01742 Csa03g04277 Chy04g00420 . . . . . . . . . Sed13g1574 . Cmo09g00101 . . . Car09g00095 . . Bhi09g02092 Tan01g5013 Cmetu04g2766 . Hepe01g1686 Mch11g0120 . Cla05g01871 Cam05g2002 Cec05g2014 Cco05g2072 Clacu05g1994 Cmu05g1875 Cre05g1999 . . . Cme04g00472
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012601 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 2 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01742 Lsi_Chr04 FPKM 756.291931 783.603882 664.766602 650.880493 904.038757 1092.991333 784.927429 1423.748169 1445.791138 1250.361694