Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01743 ATGATCCGGTTCATACTTTTGCAAAACAGGCAGGGCAAGACCCGTCTCGCTAAGTATTATGTTCCTCTTGAGGAATCCGAGAAGCACAAGGTTGAGTACGAGGTTCATCGATTGGTGGTTAATAGAGATCCCAAGTTCACAAATTTCGTTGAGTTCCGAACACACAAGGTCATCTACAGACGATATGCGGGATTATTTTTCTCTCTTTGTGTGGACATAACAGACAACGAATTGGCCTACCTCGAGTGTATTCATTTGTTTGTGGAGATTCTGGACCATTTCTTCAGCAATGTGTGTGAGCTCGATTTGGTTTTTAATTTTCACAAGGTCTATCTGATACTCGATGAATTTATTCTTGCTGGAGAACTCCAAGAAACGAGCAAAAAGCGAGAGCAACAGGTTCCACATGCCCTCTTGCAAATCTTCTGCCTCGACGATAATTGGCACCTCGCATCACAAGCTTCCCCACAATCTGCAAGAGGCTCTGATTTTGGTCACAAAGCAAAATGCATTAACATAACAATGAGCAGCACAGCAAAAGCAATGAGAAGCATAACAAACACAAGACCTTTAGTCGCTGCCATGAGAAATGTGAATGGTGTTTGTTATGCAAAGGTGTCTGTTTATAGGGGGCGGATTTTCCAAAGGGAAAACAGTGAAGAAACTGAAGAAGTTAGAGCAGAAGAGATGATGAGTTCAAGAGGCTCAATGAGAAATCATGAGCTTATCATAAGGAGCAGAAGAGATGATGAAAGAGATAGCCCATCCCATCGGCCATTGAGTGCTCTACCTCGGGCCATCGACATCATACGCTCTACTGAAATAGATTTCGCGGAAAACCAGCTATATCCGATCTTGGTTGGCCTTTCACCCCTAGCCACAAGCGAGTTGCAGCCTACAATCCGAACTGAGGACGGGTTTCTCATGTCGCTACCAGCTACAGATCAGATATGA 954 44.03 MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKREQQVPHALLQIFCLDDNWHLASQASPQSARGSDFGHKAKCINITMSSTAKAMRSITNTRPLVAAMRNVNGVCYAKVSVYRGRIFQRENSEETEEVRAEEMMSSRGSMRNHELIIRSRRDDERDSPSHRPLSALPRAIDIIRSTEIDFAENQLYPILVGLSPLATSELQPTIRTEDGFLMSLPATDQI 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24741394 24745131 + Lsi04G017430.1 Lsi04g01743 661792

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01743 317 CDD AP2_sigma 1 129 IPR027156 GO:0016192|GO:0030122|GO:0035615|GO:0072583
Lsi04g01743 317 PANTHER ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY 2 129 IPR016635 GO:0015031
Lsi04g01743 317 PANTHER AP COMPLEX SUBUNIT SIGMA 2 129 - -
Lsi04g01743 317 Pfam Clathrin adaptor complex small chain 1 130 IPR022775 -
Lsi04g01743 317 SUPERFAMILY SNARE-like 1 129 IPR011012 -
Lsi04g01743 317 Gene3D - 1 138 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01743 K11827 AP2S1; AP-2 complex subunit sigma-1 - csv:101215581 264.618
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01743 Lsi-Chr4:24741394 Lsi11g01319 Lsi-Chr11:21808263 7.65E-47 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1106 Blo01g01596 . Bda01g00487 . Bpe02g00351 . . Bma01g02367 . . . Cma09g00104 . . . Cpe06g00066 . . . . . . . . . . . . . . . Cone4ag1969 Cone7ag1885 . . Lsi04g01743 Csa03g04278 Chy04g00419 . . . . . . . . . Sed14g1116 . Cmo09g00100 . . . Car09g00094 . . Bhi09g02091 Tan01g5014 Cmetu04g0002 . Hepe01g1616 Mch11g0119 . . . . . . . . . . . Cme04g00471
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001475 3 2 2 4 3 2 4 2 1 2 1 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 3 2 4 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01743 Lsi_Chr04 FPKM 7.524522 7.455739 10.783151 11.354501 39.438248 35.807228 41.004074 18.392818 18.775213 19.108318