Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01750 ATGGCTGGTGAATATAGGTTCGCTATGGACCAAAAGGACATTGTGAGGATATTGGTTGCCACCATTGATGATTTCACTAGAGGTCGTTTGATCAATAAAGAGCAGAGAAATCTTCACAAAGAGCAGTGTGCTGAGAGATTGGCAGCTGAAGGTGGAAGCAATGACAAAGATACAGAGGTTAGATACTCTGATCAAGCAGTGCTGGCGAATTTGGATTGGGGTATTGAAGCCCTTGAGGAGGCTTTAAACACATCCAATATGGAGACTAAGCTTGCACGACTTGACCATGCGGAGAAGATGCTTCAAGTGTGTGCCTTGTTGAACCCTAACGAGAAAACTGCAGGGGTTCCCAATTTCTACCTTTCTGCTTGGGCTCACTTAAATCTTTCATATCTTTGGAAATTGCGAGGAAATGTTCACAACTCAGTCCTCCATAGTCTTGAGATGTTTATTGTGGATCCCTTCTTTTCACGCAATGATTTTGCTCCTGAACTCTGGAAAGAACTCTTTCTTCCGCACATGAGCTCAATTGTTGGGTGGTATTCAGAGGAAAGGCACAGACTTGTGATCGAAGTGATTCCTGATTCTTCTGATTTATCCTTCACAGCTGATTTAGATCAATTCTTCAATGAATCTTTGATATTTTCGCTGAGGCCTGATCAAGCGGAAAAATTACAAAAGTTGGAGCAGCTTTATGGAGAATCCTTGGACGAGAATACAAGGCTCTTCGCTAAATACTTCAAGGATTGTATGAATTCTGATTCAAGCTCCTCCAAGAAGGTTGTCCCAATGTTGCCAATTGCGGAGCCACCTATGACTCCTCTTCATGAAGTGAGCCGCTCAATTCCCGATTACATAAAATTTGGACCTATTTTACCCAAGAGTGCAGGATTTTCGTCCATCATACCAAAATCTAAAGACGGTGCAATAGAAGCAAGCAGGCCAAAGGGGACTCCCAGTCCAATGAACAACACAGAGAGATTTGCAGGGTGGTATGCTCAGAATGATTCGCTAGAGGAGAATGAAGGCGATTCTGATCATGAACCTTACGATTCTTACGATCTCAGCGATACCACGACTTATAAGTTACTATCACCTAGCAGCACAAGGACATCGGAGGATGAGCAAATAGGACCTCAAGGGGAGATGTCGAAAATGGGGAGTTGCAAACATTCTCCCACCATTTTTTCTCCAATTGCATCTCCTTCAGTCCCTTCACCAAAGGTTCTATCCCCAACAGCAAATGAGAAGTTTAAAAGTGAATCTCGTTCTACATTGCGACTGTTATCTGGTCGCTTCGGCGATCAACACGTTGCTACCTCTGTCCTTGGATCACCAGCTACAAGAAACGATTACAGCTTCAGTTCGGTAGAGTCTGATGGTGAAAAAGATCGCCACGGGAGAATATATAGTCAAATGCAAAATGCAACCTATGACAACGTGAGTAGCCAAGACTCCGTGAATTGTTCAATAGATAAACTTGAGGAGGAAAGCAGAAGTCGATCGTCTGAGAATGTGACACATATAGTACGACCCCCTAAAGATTTTGTATGCCCCATAACAGGTCAGATTTTCAGTGATCCTGTTACTCTCGAAACTGGGCAGACTTATGAAAGAAAAGCAATTCAGGAATGGTTGAAAAGAGGAAATACAACTTGTCCCATTACGCGACAGCCATTGTCTTCAACTGTAATGCCTAAAACGAATTATGTCTTGAAAAGACTGATAACGTCTTGGCAGGAACAACATCCTAATCTTGCTCAGGATTCTTCGTGGACTGGTACATCAGTAAATACTGTCGTTTCTACCTTAAAAAAGACGAGCTCTCCAGCATCTACTCCTTGCGGACCAATTCACGATCCTCTTAACAGTACATACGAGTCTCTTAACCAAAAAGGCAAAAGATTAATGCAAGAAGTAGTGTCTTTATCGCCAACCAGTGTAATATCTCAAACCACAGTTGAGAAAATCATTAACAGTTTAAAACCTTTTGTCTCTTGTCTCTGTAATTTCGAAAGCTTGAAACAATGTGAGACTGCTGTGCTTGCTATAGCAGGGTTCTGGAAGGACTCAAAAGGTGATCTAGCAGTCCATTCCTACTTATCTGAATTGGCTGTTGTGAACGGTTTTGTGGAAATACTGTTAAATTCCCGGGAAAGAGAAGTCCTCAGAACCTCGATTTACATTCTTTCTGAGCTTATTTGTGCAGATGGAAGTGTTGGAGAGTCCCTTAGTAGTCTAGATTCCGATTTTGATTGCCTAGCTTCTTTGCTGACTAGTGGGTTGTCAGAGGCTTCTGTTCTTATGTGCCTGCTAAGGCCCACATTTACTCAGTTGTCAGCTCATGACCTTATACGATCCCTAGCCCAGCTGCTCCTGAAGAAAAATGAAGATTTTGATGATCTTCCATTTGTAATAGAGCCAAAAGATGCTGCTATCGCGATGCTTGAACAGATTTTTATGGGAGGGGATGAAAATAGCCAATCCCGGAATGTTAGGAGTCTTATCTCTTCTGAAGGAATCCCTGCATTAGTCAAGTTTTTGGATAGGGTAGACGTGAGGAGGCCAATACTTTCCATACTTTTATGTTGTATGCGGATCGACAAAGGTTGTAAGGACTCAATTGTAGAGAAGATTGAGCTTGCTCCAGTTCTTGAGTTACTTCATGCTGGAAATGAGGACGCTAGATGCCTGTGTGTGGCTTTTCTGTCAGAGCTGGTTCAAATGAACAGAAGGACAGAATGCAATCAAATTTTGCAGACAATTAAAGATGAAGGAGCATTCAGTACGATGCATACACTTCTTACACATCTTCAAATGGCTTCAATTGAGCAACAACCGGGCATTGCTTCTCTCCTCCTCCAGCTGGATCTCCTGGTTGAACCTCGAAAAATGAGCATTTACCGAGAGGAATCTATAGATGCACTGTTTGAAGCTTTTCGTGGAAAGGACAACTATGACTCCCAAATTGCAGCTGTAAATGCTTTATTATATCTATCTGGGCGATTGACTTCCTCAGGAAAGTCCTATACAGAAGCGTGGTTGCTCAAACTTGCAGGATTTGATCTGCCTTACAATGCTTTGGTGAAGGCCGAGGGACTGTGGAAGCCTGATAGTGAATTATCAGAGAGAGAGGAGGAAGAGAAGGCAATCAGCGTATGGGAAAAAAGGGTAGCACTTGTTCTTTGTAACCATGAAAAGGGGTACATTTTTAAAGTTATGAAAGAATGCCTGAAGAGTAAATCCTTAGAGATGGCAAAGTCCTGTCTTGTCCTTGTTTCCTGGCTTTGCTACATGGTTTCAACGCTCCCAGATACTGGGGTACGAGAGACTGCTCGCAGGTTCTTGCTTGATAAACTTGTAAACGTTCTCCAATCTTCTAATGGCCTGGAGGATAAGATTTTGGCATGTCTTGCTTTGAAAACTTTCATTAGTGATCCAGCTGCACTTGAGGAACTAGGACTTTATGCAAGATCCATCAACAAAACGTTGAGAAATCTGAGGAGAAACTCATCGGTGGTCAATGATATAATGAGAGCCTTGATGAACTTGCCATCTGTTGACGCAACAGAGCTCTGGAGTTACACTGAAGTTGGTGTACTAGATTCCAGCTCAAATGGAGAGGTTTTGTCCTTGGTTCATCTGGATGGGCGGGTTTTAAGCAGTCACTCGGATGGAACCATCAAGGTTTGGGATGCTGGCAATAAAGTATTAAGGTTGATCCAAGAAGCTCGCAAGCACACCAAAGCTGTAACATGCCTTTGTGTTTTCTCTACGGGCAACATAGTATACAGCGGTTCCTTAGACAAAACAATTCGGGTATGGAGCATCAGATCTGAAGAAATACAGTGTGTTCAAGTTCATGAAGTGAAGGAGCCAGTCTATGACTTGAAAGCCAATGCCAACATCGCATACTTCATTTCTCAAGGAACTGGAGTTAAGGAGGTGGATTTGTCCAAAAATACCACAAGCACATTCTATTCTGGTGTAAGAAAATTGCTTTGGAAACAAAACATCTACTCCTTACAACTCCATGGTGACCAACTGTTTGCTGCCGGTTCAGGAGCGGATGGAACAGCAGGAAAGACATTTTTGCTGTCAAACAAGACAACAGTAGGATCGTTTTCAACTGGAGTTGACATCCATCACATGGCAGTAAGTACCGACTTCTTGTTTACAGCCTCCAGATTGGGCATGTTAGTAGAGGTCTGGTCGAAAGAAAAGTTGACAAAAATTAGTTCAGTTAAATTAGGCAGCACTGTTAGTGGTAGCCACACAAAGATTACGTCCCTAACCACAGATGATGGAGGGTTGCTACTTGTTGGTACCTCGGATGGAAAGATACAGGTTTGTTGCAAACTTCTCGTCCTTTGTTCTTCATTAAGTCGCAGTTTAGAACTGCGGTTCAGTAAAGTCGTGGAAGGGGGCAGCGTTTTCAAGCATTGTGAACTGTTCTTTGATCGAAAATCGAGATCGATCGCCGGCGATAAACCTAATAGCTCCGTTGTTCAGCTGCTACGGCCATGTCCTCCGACACTGTACCTCCTCTCATTGCTGCTCATATCAATTATCTGCTCAACCACTTTCCCCTCCCCGTTAAGTGGTTTGGAAATAGATCAGTTCACTGAATTGATCGGAAATGGATGGTACTGGGAGTTCTTTCTTTCTTTCTTTCCTTCCTCCACTTTTCCACCACGAGGATTGTATTTATTGTCATTATCATACGGCAATTGGAATACGGATTATTGTGTTGAACGGATTACTTATTCTTACTGTTTCGGTATTCAGATTGAGCACATGTGGTCTGGCAGTAGACACTACCCTGGAATTATTGATAGGTTCACCTTAGTCATGCCTTACTGCCTTGAATTCATCAAATGGGACATCATGTACAATGCTGAATCACCGTTTTCTGCTCCTGATATAATGTTTGGACCAGAAGATGAAAATTTCCATCCATTCACAAGTAAGGTTGATGAAGGAGAAGGAGATCATAAGTCATTACAAAACAGTCTACGTGACTGGAACAGCAAAGATCCATCTCGGCTCACTAGCCTCCTTCAAGAACTGAGGGATCGATATGTGTCCTACCAAAGGAAACGTGTTGAAGGTGTTGATGATGAAAGATTGAAGTTTGAGCTTTGTACTATGTTATCGAGGGAGGGAATTGAAATGCATTTGAGTTCTGGTGTTGAGAAGCCAGAGGAGGTCAAATTTGCAGTGCCGCTGGTAGACATTAATATTAATAAGATGATACCTGGATGCCCGTGGAGGCATCCACAGAAGATATTCTTACAGGTTTTATATCCTGTGGTGAGAAAATATGCAACTACTCCTGCTGCACCTCGTCTGAAATTGGTTTCTACGTCTGAGTTGAAGGCTCTGTTATCCATCGAGGACATCAAACTTCCTCCGTGGATAGATGGAATGTGCATGGCTGAATATCTTCCGCATCTAGAAGAGAGTCTTGAGAAACAGGTTCTGGAGGCAGTTTCATTGATCGATGTTAGGAGAGGCTTTATAGAGGCATTGGACTCTTTCTTTGGAAGGCCTTTAGAAGCTGACCCGGTGTTTTGTCGAACGGCTACAGTTATCACTGCCTCCGGGGTGTTCACATTCCTGGTATTAAGTGACCTTCACTATCCTGAATATGGCATCCCATCACTATCAAGAATCATGTTATGTGGAATTTTTCCAATTGTTTACTATGAAAAAGAATATTATTCACGTAATGGTCCACATCCTCATTTCAACCCAATTTCCAAAGAAGCAGCCCTCTCTGGTGCTGCAAAGTTCTCAGGTGCACCCATCAAGTCGCAGCTTTTTACCGACTATCCTTGGAGTCCAAGGTGGGAGCCATTACAAATGGCTGAGCGGATTTTCGAGTTTCTGGCCGATGAGGCTTTGAGTTTCAAGAGGTACTGCAATGAGGCTCAACTTCAATGA 5946 42.85 MAGEYRFAMDQKDIVRILVATIDDFTRGRLINKEQRNLHKEQCAERLAAEGGSNDKDTEVRYSDQAVLANLDWGIEALEEALNTSNMETKLARLDHAEKMLQVCALLNPNEKTAGVPNFYLSAWAHLNLSYLWKLRGNVHNSVLHSLEMFIVDPFFSRNDFAPELWKELFLPHMSSIVGWYSEERHRLVIEVIPDSSDLSFTADLDQFFNESLIFSLRPDQAEKLQKLEQLYGESLDENTRLFAKYFKDCMNSDSSSSKKVVPMLPIAEPPMTPLHEVSRSIPDYIKFGPILPKSAGFSSIIPKSKDGAIEASRPKGTPSPMNNTERFAGWYAQNDSLEENEGDSDHEPYDSYDLSDTTTYKLLSPSSTRTSEDEQIGPQGEMSKMGSCKHSPTIFSPIASPSVPSPKVLSPTANEKFKSESRSTLRLLSGRFGDQHVATSVLGSPATRNDYSFSSVESDGEKDRHGRIYSQMQNATYDNVSSQDSVNCSIDKLEEESRSRSSENVTHIVRPPKDFVCPITGQIFSDPVTLETGQTYERKAIQEWLKRGNTTCPITRQPLSSTVMPKTNYVLKRLITSWQEQHPNLAQDSSWTGTSVNTVVSTLKKTSSPASTPCGPIHDPLNSTYESLNQKGKRLMQEVVSLSPTSVISQTTVEKIINSLKPFVSCLCNFESLKQCETAVLAIAGFWKDSKGDLAVHSYLSELAVVNGFVEILLNSREREVLRTSIYILSELICADGSVGESLSSLDSDFDCLASLLTSGLSEASVLMCLLRPTFTQLSAHDLIRSLAQLLLKKNEDFDDLPFVIEPKDAAIAMLEQIFMGGDENSQSRNVRSLISSEGIPALVKFLDRVDVRRPILSILLCCMRIDKGCKDSIVEKIELAPVLELLHAGNEDARCLCVAFLSELVQMNRRTECNQILQTIKDEGAFSTMHTLLTHLQMASIEQQPGIASLLLQLDLLVEPRKMSIYREESIDALFEAFRGKDNYDSQIAAVNALLYLSGRLTSSGKSYTEAWLLKLAGFDLPYNALVKAEGLWKPDSELSEREEEEKAISVWEKRVALVLCNHEKGYIFKVMKECLKSKSLEMAKSCLVLVSWLCYMVSTLPDTGVRETARRFLLDKLVNVLQSSNGLEDKILACLALKTFISDPAALEELGLYARSINKTLRNLRRNSSVVNDIMRALMNLPSVDATELWSYTEVGVLDSSSNGEVLSLVHLDGRVLSSHSDGTIKVWDAGNKVLRLIQEARKHTKAVTCLCVFSTGNIVYSGSLDKTIRVWSIRSEEIQCVQVHEVKEPVYDLKANANIAYFISQGTGVKEVDLSKNTTSTFYSGVRKLLWKQNIYSLQLHGDQLFAAGSGADGTAGKTFLLSNKTTVGSFSTGVDIHHMAVSTDFLFTASRLGMLVEVWSKEKLTKISSVKLGSTVSGSHTKITSLTTDDGGLLLVGTSDGKIQVCCKLLVLCSSLSRSLELRFSKVVEGGSVFKHCELFFDRKSRSIAGDKPNSSVVQLLRPCPPTLYLLSLLLISIICSTTFPSPLSGLEIDQFTELIGNGWYWEFFLSFFPSSTFPPRGLYLLSLSYGNWNTDYCVERITYSYCFGIQIEHMWSGSRHYPGIIDRFTLVMPYCLEFIKWDIMYNAESPFSAPDIMFGPEDENFHPFTSKVDEGEGDHKSLQNSLRDWNSKDPSRLTSLLQELRDRYVSYQRKRVEGVDDERLKFELCTMLSREGIEMHLSSGVEKPEEVKFAVPLVDININKMIPGCPWRHPQKIFLQVLYPVVRKYATTPAAPRLKLVSTSELKALLSIEDIKLPPWIDGMCMAEYLPHLEESLEKQVLEAVSLIDVRRGFIEALDSFFGRPLEADPVFCRTATVITASGVFTFLVLSDLHYPEYGIPSLSRIMLCGIFPIVYYEKEYYSRNGPHPHFNPISKEAALSGAAKFSGAPIKSQLFTDYPWSPRWEPLQMAERIFEFLADEALSFKRYCNEAQLQ 1981
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24768232 24781888 - Lsi04G017500.1 Lsi04g01750 661799

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01750 1981 CDD RING-Ubox_PUB 516 558 IPR045210 -
Lsi04g01750 1981 SUPERFAMILY ARM repeat 714 1164 IPR016024 -
Lsi04g01750 1981 MobiDBLite consensus disorder prediction 354 378 - -
Lsi04g01750 1981 SUPERFAMILY WD40 repeat-like 1206 1450 IPR036322 GO:0005515
Lsi04g01750 1981 MobiDBLite consensus disorder prediction 307 326 - -
Lsi04g01750 1981 SUPERFAMILY RING/U-box 507 586 - -
Lsi04g01750 1981 Pfam U-box domain 513 583 IPR003613 GO:0004842|GO:0016567
Lsi04g01750 1981 Gene3D - 1190 1455 IPR015943 GO:0005515
Lsi04g01750 1981 SMART WD40_4 1237 1276 IPR001680 GO:0005515
Lsi04g01750 1981 SMART WD40_4 1368 1405 IPR001680 GO:0005515
Lsi04g01750 1981 SMART WD40_4 1194 1232 IPR001680 GO:0005515
Lsi04g01750 1981 SMART WD40_4 1414 1452 IPR001680 GO:0005515
Lsi04g01750 1981 MobiDBLite consensus disorder prediction 338 422 - -
Lsi04g01750 1981 MobiDBLite consensus disorder prediction 390 422 - -
Lsi04g01750 1981 Gene3D - 644 956 IPR011989 -
Lsi04g01750 1981 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 512 587 IPR013083 -
Lsi04g01750 1981 SMART Ubox_2 515 579 IPR003613 GO:0004842|GO:0016567
Lsi04g01750 1981 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 1314 - -
Lsi04g01750 1981 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1310 1450 - -
Lsi04g01750 1981 Pfam WD domain, G-beta repeat 1246 1276 IPR001680 GO:0005515
Lsi04g01750 1981 ProSiteProfiles Trp-Asp (WD) repeats profile. 1244 1285 IPR001680 GO:0005515
Lsi04g01750 1981 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 1314 - -
Lsi04g01750 1981 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1310 1450 - -
Lsi04g01750 1981 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1244 1281 - -
Lsi04g01750 1981 ProSiteProfiles U-box domain profile. 511 586 IPR003613 GO:0004842|GO:0016567
Lsi04g01750 1981 Pfam Brain and reproductive organ-expressed protein (BRE) 1595 1879 IPR010358 GO:0070531|GO:0070552
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01750 - - - csv:101221826 2434.45
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01017 Lsi-Chr2:10481101 Lsi04g01750 Lsi-Chr4:24768232 4.75E-13 dispersed
Lsi04g01750 Lsi-Chr4:24768232 Lsi06g00851 Lsi-Chr6:17939413 1.50E-09 dispersed
Lsi04g01750 Lsi-Chr4:24768232 Lsi04g01755 Lsi-Chr4:24802230 9.90E-40 proximal
Lsi04g01750 Lsi-Chr4:24768232 Lsi04g01756 Lsi-Chr4:24815257 1.32E-53 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1120 Blo01g01600 . Bda01g00481 . Bpe02g00345 . . Bma01g02370 . . Cma01g01976 . Car01g01547 . . Cpe06g00065 . . . . . . . . . . . . . . . Cone4ag1973 Cone7ag1890 . . Lsi04g01750 Csa03g04285 Chy04g00412 . . . . . . . . . Sed13g1566 Cmo01g02034 . . . . Car09g00091 . Cpe02g00067 Bhi09g02082 Tan01g5023 Cmetu04g1950 . Hepe01g1610 Mch11g0111 . Cla05g01865 Cam05g1994 Cec05g2006 Cco05g2064 Clacu05g1986 Cmu05g1867 Cre05g1991 . . . Cme04g00463
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005991 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 2 1 2 6 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01750 Lsi_Chr04 FPKM 2.716588 2.650927 0.465112 0.407404 0.663959 0.592782 0.746829 0.546489 0.465024 0.495915