Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01753 ATGAGTCATATGGTTCGGGCTCTCCGGCAGTGGCCGATGGTGCAGAAACATTGTCGTGGTTGCGCCGTACATCATTTTCTCTCCTCATCTCCGCCGTGGGTGGCCAAAAGAATCGACTCTCGTCGACTATCTTTAGCTACCGTTCATTCTGCTCGTGGCGAAGTCCAATATGGATCAAAAGGACTCAGATTACCCAAAGCTCCAGCACCAGCCAAATCCCAAGAAGATGAGAGCGTCGATGATGATTCGGATGCTAGAAAGAGCCGCAACCAGCTTAAACGGGAAGCTCGACGAGCCGTCCAATGGGGCATGGATCTTGCGGCCTTCTCCACTCCTCAAATTAAACGCATCCTTAGAGTGACGTCTCTCGAGAAAGATATCTTCGACGCAATAATGCTTGTGAAGAGGTTTGGGAGTGATGTCAGAGAAGGAAAGCGAAGGCAGTTCAATTACATTGGATCAATTGATGAAAATAATGTAAACTTGCTGTCTCTATGGTCCTTGAATATATATGAGCACGAGATCCGGTTGCCACTTATCCCACTAAACTGCATTCCGGTGACTACTCAACAAGTTGATGCCACAAAAGCCGGTGACCATAAGATACTACAGAAATTGTGTGCTTCAGTAGATGATGAAGTTTCAAATTCTGTATACGAGGAGGAGGAAGAAGAGGGTCCGCATGTGGACATCGCTACAAGATGGCTTGACGGGCTAGTCAGTAAGGACAACAACATTACAAATGAAATTTATTCACTACAAACTGTTGAATTTGACCGTCAGGAGCTGCGGAGACTTGTTCGAAAAGTTCATACGATTGAAGAACGCAAGGCAGCAATTGAAGAGAATGAGGATGAAGTCAATACCGCGATAACAAACGCCACAAAGCCCCTTGCTCGTTTCCTTTGTAGAATGGCGAAACAGTTGCCCTCCTATGAACTCTAG 945 46.24 MSHMVRALRQWPMVQKHCRGCAVHHFLSSSPPWVAKRIDSRRLSLATVHSARGEVQYGSKGLRLPKAPAPAKSQEDESVDDDSDARKSRNQLKREARRAVQWGMDLAAFSTPQIKRILRVTSLEKDIFDAIMLVKRFGSDVREGKRRQFNYIGSIDENNVNLLSLWSLNIYEHEIRLPLIPLNCIPVTTQQVDATKAGDHKILQKLCASVDDEVSNSVYEEEEEEGPHVDIATRWLDGLVSKDNNITNEIYSLQTVEFDRQELRRLVRKVHTIEERKAAIEENEDEVNTAITNATKPLARFLCRMAKQLPSYEL 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24785649 24789548 + Lsi04G017530.1 Lsi04g01753 661802

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01753 314 Gene3D - 97 157 IPR023153 -
Lsi04g01753 314 MobiDBLite consensus disorder prediction 73 93 - -
Lsi04g01753 314 MobiDBLite consensus disorder prediction 57 93 - -
Lsi04g01753 314 CDD YjgA-like 86 279 IPR006839 -
Lsi04g01753 314 Coils Coil 263 283 - -
Lsi04g01753 314 SUPERFAMILY PSPTO4464-like 221 276 IPR023153 -
Lsi04g01753 314 SUPERFAMILY PSPTO4464-like 98 154 IPR023153 -
Lsi04g01753 314 Pfam Protein of unknown function (DUF615) 217 283 IPR006839 -
Lsi04g01753 314 Pfam Protein of unknown function (DUF615) 86 154 IPR006839 -
Lsi04g01753 314 PANTHER OSJNBB0026I12.6 PROTEIN 192 311 - -
Lsi04g01753 314 PANTHER OSJNBB0026I12.6 PROTEIN 1 154 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01753 - - - csv:101214378 426.017
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1128 . . . . . . . Bma01g02373 . . . Cma09g00099 . . . Cpe06g00062 . . . . . . . . . . . . . . . Cone4ag1977 Cone7ag1895 . . Lsi04g01753 Csa03g04287 Chy04g00410 . . . . . . . . . Sed01g2480 . Cmo09g00096 . . . Car09g00087 . . Bhi09g02078 Tan01g5032 Cmetu04g0766 . . . . Cla05g01864 Cam05g1993 Cec05g2005 Cco05g2063 Clacu05g1985 Cmu05g1866 Cre05g1990 . . . Cme04g00461
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010806 0 2 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 3 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01753 Lsi_Chr04 FPKM 29.840857 33.757706 33.598331 32.34029 14.964435 16.055965 14.077063 38.806767 39.403347 37.252056