Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01754 ATGGGTACAACACAAATTTCATTTCTATTATATCTTCTTACAATCCAAATTTCAATATCAGGAGTATTTTCCACCACTTTCAGCATAGTAAATAAATGTGATTACACAGTTTGGCCGGGAATTCTCTCAAACGCCGGAGTTCCACCACTTCCCACCACCGGATTCGTCCTTGCCGCTGGCGAGTCCAAAACAATCTCTGCTCCGGCCTCTTGGGGTGGCCGATTCTGGGGCCGAACCCGCTGTTCACAAGACTCCACCGGAAAATTCTCTTGCCTTACTGGAGATTGCGGCTCCGACAAGGTCGAGTGTAGCGGAAACGGCGCGAAGCCACCGGCAACTCTGGCAGAGTTCACCCTCGACGGCGCCGGCGGATTGGATTTCTTCGACGTGAGTTTGGTGGACGGTTACAATATCCCTATGCTGGTGGTCCCACAAGGCGGCACCGGCGAGAAATGCTTGAGCACGGGATGCGTTGTGGATTTGAACGGCGCGTGTCCTCCAGAACTCAAGGTTACGAGCGTGGACGGCGGAGATAACGTCGCGTGTAAAAGCGCGTGTGAAGCATTTAACCAACCGCAATTCTGTTGCAGTGGCGAGTACGCAACTCCCGATACTTGCAAACCTTCTGCGTACTCGCAGGTGTTTAAAAACGCGTGCCCACGCGCTTATAGCTACGCTTACGACGACACGACCAGCACGTTTACATGTGCCAACGCCGATTATATTATAACATTCTGCCCTTCACCCAACACTAGTCAGAAATCAACGGACAATCACAACACAAACACGCCGGCGATCAACGGCGGCAACGGCACAATGGTTTATGAAGGGGCTGAGTATGATCTAAGCGGCGCGTCGAGAATAACGCTCCGCCATATTCTGGGGGTAGTCGTTGCCACGGTGGCGATTCTTCAAATTCGGCAACTCTTTTGA 933 51.88 MGTTQISFLLYLLTIQISISGVFSTTFSIVNKCDYTVWPGILSNAGVPPLPTTGFVLAAGESKTISAPASWGGRFWGRTRCSQDSTGKFSCLTGDCGSDKVECSGNGAKPPATLAEFTLDGAGGLDFFDVSLVDGYNIPMLVVPQGGTGEKCLSTGCVVDLNGACPPELKVTSVDGGDNVACKSACEAFNQPQFCCSGEYATPDTCKPSAYSQVFKNACPRAYSYAYDDTTSTFTCANADYIITFCPSPNTSQKSTDNHNTNTPAINGGNGTMVYEGAEYDLSGASRITLRHILGVVVATVAILQIRQLF 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24798564 24800959 + Lsi04G017540.1 Lsi04g01754 661803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01754 310 Pfam Thaumatin family 31 247 IPR001938 -
Lsi04g01754 310 ProSiteProfiles Thaumatin family profile. 24 247 IPR001938 -
Lsi04g01754 310 PIRSF PR5 1 278 IPR001938 -
Lsi04g01754 310 CDD TLP-PA 26 246 - -
Lsi04g01754 310 PANTHER BNAA02G17480D PROTEIN 9 271 - -
Lsi04g01754 310 SMART tha2 27 247 IPR001938 -
Lsi04g01754 310 SUPERFAMILY Osmotin, thaumatin-like protein 25 248 IPR037176 -
Lsi04g01754 310 PANTHER OS03G0233200 PROTEIN 9 271 IPR001938 -
Lsi04g01754 310 PRINTS Pathogenesis-related protein signature 126 142 IPR001938 -
Lsi04g01754 310 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Lsi04g01754 310 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Lsi04g01754 310 PRINTS Pathogenesis-related protein signature 237 246 IPR001938 -
Lsi04g01754 310 Gene3D Thaumatin 25 247 IPR037176 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi04g01754 Lsi08g01311 CCT
Lsi04g01754 Lsi08g01311 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01754 Lsi-Chr4:24798564 Lsi08g01312 Lsi-Chr8:21484746 4.64E-153 dispersed
Lsi01g00594 Lsi-Chr1:4740368 Lsi04g01754 Lsi-Chr4:24798564 1.80E-104 wgd
Lsi10g00478 Lsi-Chr10:6914624 Lsi04g01754 Lsi-Chr4:24798564 3.20E-93 wgd
Lsi04g01754 Lsi-Chr4:24798564 Lsi07g01099 Lsi-Chr7:16390594 1.08E-99 wgd
Lsi04g01754 Lsi-Chr4:24798564 Lsi08g01311 Lsi-Chr8:21466639 1.63E-96 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01754 - - csv:101214136 587.03