Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01755 ATGTTTATTGTGGAACTCTTATTTTCACGCAATGATTTTGCTCCTGAACTCTGTAAGGAACTCTTTCTTCCACACACGAGCTCAATTGTTGGGTGGTATTCAGAGGAGAGGCATAGACTTGTTATCGAAGTGATTCCTGATTCTTTTGATTTATCCTTCACCACTTATTTAAATCAATTCTTCAATGAATCTTTGATATTTTCGCTGAGGCCTGATCAAGTGGAAAAGTTACAAAAGTTGGAGCAGCTTTTCGCTAAATATGTTAAGGATTGTATGAATTTTGATTCAAGCTCCACCAAGAAGGTTGCCCCAATGTTGCCAATCGCGGAGCCACCTATGACTCCTCTTCATGAAGTGAGCCGCTCAATTCCCGATTACATAAAATTTGGACCTATTTTACCCATGAGTTCAGGGTTTTCATCCATCATACAAAAATCTAAAGACGGTGCAATAGAAGCAACTAGGCCAAAGGGGACTTCCAGTCCAGCCGACAACACAGAGAAATGCAGGGTTGTATGCTCAGGCCTTTCACTTCAAGTTCTATCTCCAACAGCGAATGAGAAGTGTAAAAGTAAATCTCGTTCTACATTGCGACGGTTATCTGGTCGCTTCAGCGATCAACGTGTTGCTACCTTTGTCCTTGGATCACCAGCTACAAGAAACGATTACAGCTTCAGTTCGGTAGAGTCTTTTAATTGCAACTGCTCTTTGATTTTTGACTTGAAGAAAGATTGCCAGGGGAGAATAGAATATATAGGCAGATGCACAATGCAACCTATGACAGTGAGTAGCCAAGACTCCGAGAATTGTTCAATAGATAAACTTGAGGCGGAAAGCAGAAGTCGATCCTCTGAGAATGTGACACATATAGTACGACCCCCTAAAGATTTCGTATGCCTCATAACAGGTCAGATTTTTAGTGATCCTGTTACTCTCGAAACTGGGCAGACTTATGAAAGAAAAGCAATTCAGGAATGGTTGAAAAGAGGAAATACAACTTGTCCCATTACGCAACAGCAATTGTCTTCAACTGTAATGCATAAAACGAATTATGTCTTGAAAAGACTGATAACGTCTTGGCAGGAACAACATCCTAATCTTGCTCAGGATTCTTCGTGGACTGGTACATCAGTAAATACTGTCGTTTCTACCTTAAAAAAGACGAGCTCTCCAGCATCTACTTCTTGCCGACCAATTCGCGATCCTCTTAACAGTACATACGAGTCTCTTAACCAAAAAGGCAAAAGATTAATGCGAGAAAGTATCTTTATCGCCGATCAGTGTAGTATCTCAAACCACAGGTTCTGGAAAGACTCAAAAGGTGATCTAGCAATCCATTCCTACTTATCCGAATTGGCTGTTGTGAACGGCTTTGCGGAAATGCTGTTAAATTTCCAGGAAAGAGAAGTCCTCGGAACCTCATTTTACGTTCTTTCTGAGCTTATTCGTGCAGATGGAAAGCCAAAAGATGCTGCTATTGCGATGCTCGAACAAATCTTCATGGGAGGGGATGAAAATAGCCAATCCCGGAATGTTAAGAGTCTTACTTCTTCTGAAGGAATCCCTGCATTAGTCAAGTTTTTGGATAGGGCAGAAGACACAATTGTGGAGAAGATTGAGCTTGTTCCAGTTCTTGAGTTACTTCATGCTGGAAATGAGGACGATAGAGGCCTGTGTGTGGCTTTTCTGTTAGAGCTGGTTCAAATGGACAGGAGGACACGATGCTATCAAATTTTGCAGACAATTAAAGATGAAGTAGCATTCTGTACGATGCATACACTTCTTACCCATCTTCAAATGGCTACTATTGAGCAGCAACCAGGCATTGCTTTTCTCCTCCTCCAGCTGGATCTCCTGGCCGAGGGACTGTGGAAACCTGACAGTGAATTATCAAAGAGAGGAGGAAGAGAAGGCAGATTCGTAGCACTTGTTCTTTGTAACCATGAAAAGGGGTACATTTTTAAAGTTATGAAAGAATGCCTGAAGAATAAATCCTTAGAGATGGCAAAGTCCTGGATTGTCATCGTTTCCTGGCTCTGCTACATGGTTTCGACATTCCCAGATACTGGGGTACGAGAGACTGCTCGGAGGTTCTTACTTGATGATAAGACTTTGGCATGTCTTGCTTTGAGAACTTGCATTAGTGATCCAGCACTGGGTACTGCTTTGAATTTTGTAGAAAGTTCAACAGGGGCAAAGTTCTTGCTCGTCACCGACTATTCTCTTGGTGTACATGTTGAAAATTCCTATAGTCAAATAGCGTTCTTTCATAATTTTGATCTGGTGGTCTGCTGGATGGATGAAAAGGTTCTCTCATCTCATTCTCTCAAGGATGCCCCATGTAGAGTTGAGGAGTTGATCAATGTTATGCAAAAGGAGAAGGATTGTTTTGTGAAGAATGTTAGTGATGCAACTAGGCACTGGGCTGCTGTTGCAGGTGCTATTGCCGCTACAGAGAATAAAGATTGTCTTGATCTTTTTATCCAATTAGATGGACTAAGCTTCATTCAAAGATGGCTTAAGGATGCTCAAAAGTTCAGTAATGATACAAATGATAGCACCGTGGAAGAGTCTATCATTGTTTTGTTACAAGCACTTAAAAAGCTACATATAACTGCTGAGAAATCTATTTCTTCTGGGATTTTGTTTACTGTTAAGGGTCTTTATGAAAATACTGACCATGGAAAATCTAGGTTTGGGAAAGAATTGAGTGTACTTCTTGATAGGTGGATGCAGGAGATAAAAGATAAAGATTTGCTTCATGATGCAGAAAATGTTGGTGTACAGTTTGATGAAGAAAATTCAAATCTTGCTCGTGTAGCAGGAAGGTCATCTGCTTCAGGTGCGTCTGGTTCAAGAGAATTATCCAGTGATGGAAAGCAAACAGCAGAACCTGTCAGGGACAAGGTATTATCCTCTGGAAGCTCAGATGCACTTCACCCAGATAAGATCGAAGATTCAAAGGTTCAATCTCCAAGAAACGAGCTGAATTCTCATTCAAATTCTGGAAATTCAGTTGTGAAAGATAGATCTCCAGATTTAACAACAAACTCTGCTGTTATGTTGGTCCCAACTGAGGATGTTTTGAAGAAGGAAGAAACATCTCTATGTTCTGTTGGAGGAGGAACCTCAGTTATTGTGGCTTGTAGCTTTCCAGCTGCTAGGGAAGGTAGCAATGACGAACAACTAGCTGGTTCAAAGAAGTTGAATGAGTCGCCAGAGCTTGAAAACCAAGTGAGTAAGATTGATGGCTCTTCTGGTAGGTCATGTGTGACAGAGAAATCAGATAACTCTTCACATTCTCCCATGCAAGATCCCGGAACTGTTTTGGAAGGTTTTGATGCTGCAAATGGTGAAGAGTCTGCTAAAGAAGCTCCAGCTGAACAAGATAATGATGGTCTTGACAATGCTGGTGTCTGTGAGCGTAGTTCTAGTCTAGATGGTGAGAGAGTTTCCACATTAGATTCAGCACTTGGGATATCTGATAAAAAGACAAATTACGCTAGCATGTCTGTGTTCAAACCTGCAGGCTTAGATACTGAGCGCTATGGAAATACTCTGCGGGATTTGTCTATGAATGGGAGTCTAATAGGGAAACTTGAGGAACGTGGGGCTTCTTTTTCAAGGATGGAAGACTTCGGTCGTGTTAATTGGGACAGACAACGTCGGAGAAAGGAAGATGACAGTGGGATGACTAAGTCTGAATTTTCCAAACCGAAATTAAACCTCAAAACTTCAAATATAATTGATAATAGGTCAGACATGGAACTTGAGTATGGTATAGTTGATGCTCTGGAGGTTGCTCGGCAAGTAGCTCAAGAAGTAGAAAGAGAAGTAGTGGAATATAGGGAGCCATCCTGCAGCTCTTCTTCTGACAAAGTTTCTGATGGTGGAATCAGGCAGCTGGGTAAACCAGACACCATGGCTGAAAAACAGGACCTGCCAGCTGATCTCCAAGGAAGGGAGGTCCAATCTGCAAAAAGTCATGTTGCTGAATCATATTCTGATGCGGAGACATGCCTAACCCATCCAGATAATTTAGATACTCAACCAGAAAATTTAAATGAAATGGAGTCCTCCATGGTCACTGAAGCAGCTCGAGGGGCAGATGCAAGTACAGAAAAAGGATTTTGTGAATTTGATCTAAATCAAGACGTATTTAATGATGATGCAGAGCAGTTAGCAACTCCAGTGTCTTTACCAGTGTCTATTATCTCCGTTTCCAGACCAGCTGCTTCTTCTGGATTGCCTCTAACACCTTTGCAGTTCGAAGGGACGCTTGGATGGAGAGGCTCTGCAGCCACTAGTGCTTTCCGGCCTGCTTCCCCACGTAAAGTTCCTGATAGTGATAGAACTCTTTCTAGTGGGGGAAATTCTGATAGTTCAAAGCAGAGGCAGGATTTTCTTGACATTGATTTGAATGTGGCTGAGACTGGAGAAGAAACCAGGAAACAAAACCTAGGATCATCCTTCCCACAAGCCGGGGAGTTTTTAGTTGAAAGTGGACAAGGAAGATCCGGGGGACTAAAGCTGGACCTTAACTGTGTCGGCGACGATGTTGATACTCCAGCATCAGATTTGAGAATGGAGGGACTCTTCAACAACCAGAATAGCTACAGTGCTTCTCCTGCCTGCTCTTCATCATCGATGCAACCTTTGGTAAGGAATATTGATTTGAATGATAGGCCATACGTTCAAGGTGATGCTCCAGATCAAGGTCCTGGTAAGTATTGTCAAAATGCAAGTGCTTATGGACGGGGTAATTCAGATGCTTCTGTTATTTCCATTATGGGTACAAGGGTGGAAGTTAGTAGAAAAGATTTTCCTTTTCATGCTTCATCGTTGCCAAATGGCAGAACTGTTGAGCCTGCTGGAATGGGTGCTACTTTAGCAAGGACAGGAGATATACTAGGGATGAGTTCTGCGGTTTCTTATCACCAGACAACTCCTTTTATTGGTTACAATGGATTGACACCAGGGCCGACCATTTCATTCTCAACCATGTATGAACCCAGTGGTTCAATGCCTTACATGGTTGATTCAAGAGGAGCTGCTGTTATGCCTCAATTTATGGGCCCTATGTCAGCTGTTCCACCTTCCTCTTACTCTCACCCGCCGTTTATCATGGGGATGGCAGATGCACAGCTGACTCCCAATGGCGTTGCTCACTCACGACCTAAGTTTGATTTGAATTCTGGATTAAATGATTCTGGGGGTTTAAAGCAGCTTCTATTCCCAGACCATCTTCGATCCATGGAAGAGCAGTTGAGACAACCCTCAAGTTCTGGAGTTGGTGCAAAAAGGAAAGAACCAGATTGCCCTGATGGTGGGTGGGAAGGGTATCTGCTAAGCTATAAACATCAGCAGCCTCCATGGAAACAGTAA 5385 42.47 MFIVELLFSRNDFAPELCKELFLPHTSSIVGWYSEERHRLVIEVIPDSFDLSFTTYLNQFFNESLIFSLRPDQVEKLQKLEQLFAKYVKDCMNFDSSSTKKVAPMLPIAEPPMTPLHEVSRSIPDYIKFGPILPMSSGFSSIIQKSKDGAIEATRPKGTSSPADNTEKCRVVCSGLSLQVLSPTANEKCKSKSRSTLRRLSGRFSDQRVATFVLGSPATRNDYSFSSVESFNCNCSLIFDLKKDCQGRIEYIGRCTMQPMTVSSQDSENCSIDKLEAESRSRSSENVTHIVRPPKDFVCLITGQIFSDPVTLETGQTYERKAIQEWLKRGNTTCPITQQQLSSTVMHKTNYVLKRLITSWQEQHPNLAQDSSWTGTSVNTVVSTLKKTSSPASTSCRPIRDPLNSTYESLNQKGKRLMRESIFIADQCSISNHRFWKDSKGDLAIHSYLSELAVVNGFAEMLLNFQEREVLGTSFYVLSELIRADGKPKDAAIAMLEQIFMGGDENSQSRNVKSLTSSEGIPALVKFLDRAEDTIVEKIELVPVLELLHAGNEDDRGLCVAFLLELVQMDRRTRCYQILQTIKDEVAFCTMHTLLTHLQMATIEQQPGIAFLLLQLDLLAEGLWKPDSELSKRGGREGRFVALVLCNHEKGYIFKVMKECLKNKSLEMAKSWIVIVSWLCYMVSTFPDTGVRETARRFLLDDKTLACLALRTCISDPALGTALNFVESSTGAKFLLVTDYSLGVHVENSYSQIAFFHNFDLVVCWMDEKVLSSHSLKDAPCRVEELINVMQKEKDCFVKNVSDATRHWAAVAGAIAATENKDCLDLFIQLDGLSFIQRWLKDAQKFSNDTNDSTVEESIIVLLQALKKLHITAEKSISSGILFTVKGLYENTDHGKSRFGKELSVLLDRWMQEIKDKDLLHDAENVGVQFDEENSNLARVAGRSSASGASGSRELSSDGKQTAEPVRDKVLSSGSSDALHPDKIEDSKVQSPRNELNSHSNSGNSVVKDRSPDLTTNSAVMLVPTEDVLKKEETSLCSVGGGTSVIVACSFPAAREGSNDEQLAGSKKLNESPELENQVSKIDGSSGRSCVTEKSDNSSHSPMQDPGTVLEGFDAANGEESAKEAPAEQDNDGLDNAGVCERSSSLDGERVSTLDSALGISDKKTNYASMSVFKPAGLDTERYGNTLRDLSMNGSLIGKLEERGASFSRMEDFGRVNWDRQRRRKEDDSGMTKSEFSKPKLNLKTSNIIDNRSDMELEYGIVDALEVARQVAQEVEREVVEYREPSCSSSSDKVSDGGIRQLGKPDTMAEKQDLPADLQGREVQSAKSHVAESYSDAETCLTHPDNLDTQPENLNEMESSMVTEAARGADASTEKGFCEFDLNQDVFNDDAEQLATPVSLPVSIISVSRPAASSGLPLTPLQFEGTLGWRGSAATSAFRPASPRKVPDSDRTLSSGGNSDSSKQRQDFLDIDLNVAETGEETRKQNLGSSFPQAGEFLVESGQGRSGGLKLDLNCVGDDVDTPASDLRMEGLFNNQNSYSASPACSSSSMQPLVRNIDLNDRPYVQGDAPDQGPGKYCQNASAYGRGNSDASVISIMGTRVEVSRKDFPFHASSLPNGRTVEPAGMGATLARTGDILGMSSAVSYHQTTPFIGYNGLTPGPTISFSTMYEPSGSMPYMVDSRGAAVMPQFMGPMSAVPPSSYSHPPFIMGMADAQLTPNGVAHSRPKFDLNSGLNDSGGLKQLLFPDHLRSMEEQLRQPSSSGVGAKRKEPDCPDGGWEGYLLSYKHQQPPWKQ 1794
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24802230 24815106 - Lsi04G017550.1 Lsi04g01755 661804

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01755 1794 MobiDBLite consensus disorder prediction 939 1013 - -
Lsi04g01755 1794 ProSiteProfiles U-box domain profile. 292 367 IPR003613 GO:0004842|GO:0016567
Lsi04g01755 1794 MobiDBLite consensus disorder prediction 1063 1105 - -
Lsi04g01755 1794 Pfam U-box domain 294 364 IPR003613 GO:0004842|GO:0016567
Lsi04g01755 1794 SUPERFAMILY RING/U-box 288 367 - -
Lsi04g01755 1794 MobiDBLite consensus disorder prediction 1448 1464 - -
Lsi04g01755 1794 MobiDBLite consensus disorder prediction 993 1013 - -
Lsi04g01755 1794 MobiDBLite consensus disorder prediction 1752 1794 - -
Lsi04g01755 1794 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 293 368 IPR013083 -
Lsi04g01755 1794 ProSiteProfiles TFIIS N-terminal domain profile. 834 917 IPR017923 -
Lsi04g01755 1794 MobiDBLite consensus disorder prediction 1282 1311 - -
Lsi04g01755 1794 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 780 918 IPR035441 -
Lsi04g01755 1794 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN 779 1793 - -
Lsi04g01755 1794 MobiDBLite consensus disorder prediction 1055 1112 - -
Lsi04g01755 1794 MobiDBLite consensus disorder prediction 1434 1467 - -
Lsi04g01755 1794 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN-RELATED 779 1793 - -
Lsi04g01755 1794 SMART Ubox_2 296 360 IPR003613 GO:0004842|GO:0016567
Lsi04g01755 1794 CDD RING-Ubox_PUB 297 339 IPR045210 -
Lsi04g01755 1794 MobiDBLite consensus disorder prediction 939 959 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01755 - - - csv:101221601 1730.3
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01755 Lsi-Chr4:24802230 Lsi06g00851 Lsi-Chr6:17939413 2.63E-08 dispersed
Lsi04g01750 Lsi-Chr4:24768232 Lsi04g01755 Lsi-Chr4:24802230 9.90E-40 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1137 . Blo12g00881 . . . . Bma04g00250 Bma01g02376 . . Cma01g01979 Cma09g00097 Car01g01551 . . Cpe06g00060 . . . . . . . . . . . . . . . . . Cone17ag1414 Cone20ag0069 Lsi04g01755 Csa03g04289 Chy04g00407 . . . . . . . . . Sed01g2483 Cmo01g02038 Cmo09g00094 . . . Car09g00085 . Cpe02g00065 Bhi09g02076 Tan01g5035 Cmetu04g3193 . Hepe01g1606 Mch11g0106 . Cla05g01862 Cam05g1991 Cec05g2003 Cco05g2061 Clacu05g1983 Cmu05g1864 Cre05g1988 . . . Cme04g00459
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008019 0 1 1 2 0 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01755 Lsi_Chr04 FPKM 0.0 0.0 4.081254 4.24843 154.476791 144.151108 157.298691 0.0 0.0 0.0