Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01757 ATGAGGAAAAAGTCGCTTGATTCTGTTGTCTGCCATTTGTGTTTCTTCTTTATACTTATTTTCTTTCCCACTTCTTGCTTCGCCAATCGCGATATGGAAACGCTGTTGAAGATGAAGAGCGCCTTGATCGGACCGGGGAGGTCGGGGTTAAGTGATTGGATGCCGTCGTCGTCCCCGTCTGCTCATTGCGATTTCTCTGGCGTTACGTGCGATGGTGATAGTAGAGTTGTTGCGCTTAACATCTCGAATTTCCGTCTATTCGGCACAATTCCGCCGGAGATTGGGATGTTCGAGAAGATTGAGAACTTGACCTTAGTGAGTAATAATCTCACTGGAGGGCTTCCTCTTGAAATGGCGAAACTCACGTCGCTTAAGTTTCTTAACCTATCTAACAACGCATTTGGTGTTAATTTAGCGGCGGAAATCACGTTAGGAATGACGGAACTCGAGGTTTTCGATATATACAACAACAATTTCTCTTGTCCACTACCGGTGGAGTTTGTCAGACTGAAGAAGCTTAAGTATCTTGACCTTGGCGGATCCTACTTTAATGGTCAGATTCCTTCTGTTTACTCGGAGATGCAGTCGTTAGAGTACTTGAGCGTGCGGGGAAATATGCTTACCGGAAGAATTCCAGCGAGTTTGGCGCGGTTGAAGAATCTTAGATATCTTTACGCCGGATATTTTAATCATTACGACGGCGGAATTCCGGCAGAGTTTGGATCGTTGAGTTCCCTGGAGCTTATCGATTTAGCCAACTGTAACCTCACCGGTGAAATTCCCCCGAGTTTGGGGAATTTGAAGCACCTGCATAGTTTATTTCTTCAAGTAAACAATCTTACCGGTCGGATTCCCCCGGAACTTTCCGGTCTGATTAGCCTCAAGTCATTGGACCTCTCGCTGAACGAACTTACCGGAGAGATACCGTCGAGTTTCGTGGCGCTGCAGAACCTTACCCTGATCAATTTGTTTAGCAACAAACTTCACGGTCCAATTCCTAGTTTCGTCGGTGATCTTCCACATCTCGAAGTGCTTCAGTTGTGGAGTAACAACTTCACGCTCGAGCTCCCCGAGAATCTCGGGCGTAACGGAAAATTGTTTCTGCTTGACGTGGCGACAAATCATTTAACTGGGCTCATTCCTCCGGATTTATGTAACGGTAGGTTGAAGACTTTGATTCTGTTGGATAATTACTTTTTTGGACCCATCCCCGAGAAACTAGGCCGGTGTGATTCGCTTACGAAAATAAGAATTGCGGGTAATTTCTTTAATGGAACGGTTCCGGCGGGGTTCTTCAACTTTCCGGCGTTGGAGCTACTCGATATCAGTAATAATTACTTTTCCGGCGCTCTTCCGTCGCAAATGTCAGGGAAGTTTCTTGGAACTCTACAGCTTAATAACAACAATATTACAGGGGAAATTCCGGCGGCGATTAAGAACTTAGAAAACTTGCAGGTTGTTTCTCTGGAACATAACCAATTCAACGGGAAATTGCCTGTGGAAATATTTGAATTGAACAAGTCGCTGAGGATTAACGTCAGCTTTAACAATATTGGCGGCGAGATCCCGCATTCGGTCGTTCGGTGCACCTCTCTAACATCAATTGATCTCAGTAAAAATAATCTTCTCGGCCCAATTCCTAGAGGAATTTCGAAGCTGAAAATCTTGAGCGTCCTCAATTTGTCAAGAAATCACTTGACGGGCCAAATTCCGAATGAGATTCGGTCGATGATGAGCCTTACAACTCTGGATTTGTCATACAACAATTTTTACGGCAGAATCCCCACCGGCGGTCAGTTTTCTGTATTCAACGGCAGCGCATTTGTCGGAAACCCTAACCTCTGCTTCCCCCACGGGCCTTGTGCATCAATTCACAGGAATGTGAAATCTGTTAAACTAATCATTCCAATCGCTGCTATATTCATCGTTCTGTTATGCGTACTCGCTGCATTTTATCTGCGGAAGAGAAAGAGGATTCAGAAATCAAAGGCATGGAAACTCACAGCGTTCCAACGCCTCAACTTCAAAGCAGAGGACGTCCTTGAGTGTTTGAAAGAGGAAAATATCATCGGCAAAGGCGGTGCCGGGGTCGTCTATCGTGGATCAATGCCAGACGGCTCCGTCGTGGCGATTAAATTATTGTTAGGAAGTGGCCGGAACGACCACGGTTTCTCTGCCGAAATTCAGACTCTTGGCCGAATCAAGCACCGGAATATCGTCAGGCTTTTGGGGTACGTGTCGAACAGAGACACAAATCTGCTGCTGTACGAGTACATGCCTAATGGTAGCTTGGACCAGAGGCTGCATGGAGTGAAGGGCGGGCATTTGCACTGGGACTTGCGGTACAAGATCGCCATGGAAGCTGCCAAGGGGCTCTGTTACCTGCACCATGATTGTACGCCGCTGATCATTCACAGAGACGTGAAGTCCAATAACATACTGCTCGATAAGCTGTTTGAGGCACATGTTTCTGACTTTGGGCTCGCCAAGTTCTTGCAGAACGGCGGCGCCTCCGAGTGTATGTCCTCCATTGCCGGCTCCTACGGTTACATCGCTCCAGAATACGCCTACACTCTGAAAGTGGACGAGAAAAGCGACGTGTACAGTTTTGGTGTGGTACTGCTGGAGCTTATAGCCGGGAGGAAGCCAGTGGGGGATTTTGGAGAAGGTGTGGACATAGTCAGGTGGGTCCTGAAAACCACATCAGAACTCTCTCAACCGTCGGATGCAGCGTCAGTATTAGCTGTGGTGGACTCGCGCCTCACAGAATACCCTCTCCAAGGCGTAATCCATCTGTTCAAAATAGCAATGATGTGCGTTGAAGAAGACAGCTCTGCAAGGCCAACCATGAGAGAGGTTGTTCACATGCTCTCCAATCCTCCAAGGTCTGCCCCTACTCTCATCAACCTCTAA 2913 47.2 MRKKSLDSVVCHLCFFFILIFFPTSCFANRDMETLLKMKSALIGPGRSGLSDWMPSSSPSAHCDFSGVTCDGDSRVVALNISNFRLFGTIPPEIGMFEKIENLTLVSNNLTGGLPLEMAKLTSLKFLNLSNNAFGVNLAAEITLGMTELEVFDIYNNNFSCPLPVEFVRLKKLKYLDLGGSYFNGQIPSVYSEMQSLEYLSVRGNMLTGRIPASLARLKNLRYLYAGYFNHYDGGIPAEFGSLSSLELIDLANCNLTGEIPPSLGNLKHLHSLFLQVNNLTGRIPPELSGLISLKSLDLSLNELTGEIPSSFVALQNLTLINLFSNKLHGPIPSFVGDLPHLEVLQLWSNNFTLELPENLGRNGKLFLLDVATNHLTGLIPPDLCNGRLKTLILLDNYFFGPIPEKLGRCDSLTKIRIAGNFFNGTVPAGFFNFPALELLDISNNYFSGALPSQMSGKFLGTLQLNNNNITGEIPAAIKNLENLQVVSLEHNQFNGKLPVEIFELNKSLRINVSFNNIGGEIPHSVVRCTSLTSIDLSKNNLLGPIPRGISKLKILSVLNLSRNHLTGQIPNEIRSMMSLTTLDLSYNNFYGRIPTGGQFSVFNGSAFVGNPNLCFPHGPCASIHRNVKSVKLIIPIAAIFIVLLCVLAAFYLRKRKRIQKSKAWKLTAFQRLNFKAEDVLECLKEENIIGKGGAGVVYRGSMPDGSVVAIKLLLGSGRNDHGFSAEIQTLGRIKHRNIVRLLGYVSNRDTNLLLYEYMPNGSLDQRLHGVKGGHLHWDLRYKIAMEAAKGLCYLHHDCTPLIIHRDVKSNNILLDKLFEAHVSDFGLAKFLQNGGASECMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELIAGRKPVGDFGEGVDIVRWVLKTTSELSQPSDAASVLAVVDSRLTEYPLQGVIHLFKIAMMCVEEDSSARPTMREVVHMLSNPPRSAPTLINL 970
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24821483 24826624 - Lsi04G017570.1 Lsi04g01757 661806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01757 970 SMART serkin_6 684 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g01757 970 Gene3D Phosphorylase Kinase; domain 1 649 758 - -
Lsi04g01757 970 Gene3D Ribonuclease Inhibitor 335 627 IPR032675 -
Lsi04g01757 970 SUPERFAMILY L domain-like 70 384 - -
Lsi04g01757 970 PANTHER UNNAMED PRODUCT 8 964 - -
Lsi04g01757 970 ProSitePatterns Serine/Threonine protein kinases active-site signature. 803 815 IPR008271 GO:0004672|GO:0006468
Lsi04g01757 970 Pfam Leucine rich repeat N-terminal domain 28 71 IPR013210 -
Lsi04g01757 970 Gene3D Ribonuclease Inhibitor 30 145 IPR032675 -
Lsi04g01757 970 Gene3D Ribonuclease Inhibitor 146 230 IPR032675 -
Lsi04g01757 970 SUPERFAMILY L domain-like 388 616 - -
Lsi04g01757 970 Gene3D Ribonuclease Inhibitor 231 334 IPR032675 -
Lsi04g01757 970 SMART LRR_typ_2 243 267 IPR003591 -
Lsi04g01757 970 SMART LRR_typ_2 434 458 IPR003591 -
Lsi04g01757 970 SMART LRR_typ_2 291 315 IPR003591 -
Lsi04g01757 970 SMART LRR_typ_2 481 505 IPR003591 -
Lsi04g01757 970 SMART LRR_typ_2 121 145 IPR003591 -
Lsi04g01757 970 SMART LRR_typ_2 553 577 IPR003591 -
Lsi04g01757 970 SMART LRR_typ_2 339 363 IPR003591 -
Lsi04g01757 970 SMART LRR_typ_2 194 218 IPR003591 -
Lsi04g01757 970 Pfam Leucine Rich Repeat 293 314 IPR001611 GO:0005515
Lsi04g01757 970 Pfam Leucine Rich Repeat 245 267 IPR001611 GO:0005515
Lsi04g01757 970 PANTHER RECEPTOR PROTEIN KINASE CLAVATA1 8 964 - -
Lsi04g01757 970 Pfam Leucine rich repeat 531 590 IPR001611 GO:0005515
Lsi04g01757 970 Pfam Protein kinase domain 685 955 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g01757 970 SUPERFAMILY Protein kinase-like (PK-like) 675 957 IPR011009 -
Lsi04g01757 970 Gene3D Transferase(Phosphotransferase) domain 1 759 964 - -
Lsi04g01757 970 ProSiteProfiles Protein kinase domain profile. 684 967 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01757 Lsi-Chr4:24821483 Lsi05g00800 Lsi-Chr5:11817984 0 dispersed
Lsi04g01757 Lsi-Chr4:24821483 Lsi01g00847 Lsi-Chr1:6791970 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83591 PF00069 Pkinase 1.50E-42 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01757 K00924 - csv:101221360 1745.71