Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01764 ATGGCGCACTACATGTGGATAAGGGAAAAGCTTGACATTTTCGGCAGTGCGCGTGCTCTCATGAAACCCACCAACTCATCATTTTCCACCTCCTATTTACCGCTCTTCTCCACCACCAGTTTTCATCTAAGCCAAGCCGACATGCAAAGCATTTCTTTTTTTGTTTTTTTCGTTTTGGTTTGTGTCATATTTTTGCTTCTTTCTGAAAATGCTCAAATAGCTGCAGCAGCTCAAGGTGGAAAAAATGGCGTTTATATCGTCTACATGGGATCCGCGTCAGGCTCCAGGACTGACTTCCTTCGACTTCTCAGCTCTGTCAGCAGGCGGAATGGAAACGCAGTGGTACACACATATAAACATGGTTTCACAGGATTTGCAGCTCGTTTGTCAGAACAGGAAGCCCATGCCATGAGACAAAGCCCTGGAGTTGTTTCGGTGTTTCCAGATCCAATATTAAAGTTGCACACAACTCATTCATGGGATTTCTTGGTCAGTCAGACAAGCGTCAAAATTGACGCCAATCCCAAATCAGATCCCCCAACCTCTTCCTCTCAACCATACGATACCATTATCGGCATCTTGGACACTGGTATCTGGCCGGAATCAGAGAGTTTTAGTGACAAGGGTATGAGTCCAATACCGTCGAGGTGGAAAGGTACCTGCATGGTAGGCGATGACTTCACTTCCTCCAACTGTAATAGAAAAATTATTGGAGCAAGATTTTACGAAAGTTCTGAGAGCGACGGAATACGGTACCACTCACCTCGAGACGGAGCTGGACATGGCACCCACGTGGCATCAACGGCGGCCGGAAGCGCCGTGGCTAATGCATCGTACTATGGCCTCGCAGAAGGGACGGCCAAGGGGGGCTCCCCCGGCTCAAGGATCGCCATGTACAGAGTCTGCGTGGCCGACGGCTGTCGTGGATCGTCAATCATGAAGGCGTTTGATGATGCCATCGCCGATGGGGTCGATATATTGTCGTTATCTCTCGGTGCACCGTACTACTTCAGACCAGAATTGACGGATGACCCAATTGCCATCGGAGCCTTTCATGCAGTTGAGAAGGGGATTACAGTTGTCTGCTCCGCTGGAAACGACGGCCCCACTTCGGGATCAGTGGTCAACGACGCGCCGTGGATTATAACAGTGGCTGCCTCCACCATTGATAGGGATTTTGAGTCTGATGTTGTGTTGGGCAACAAAAAAGTGATCAAGGGAGAAGGTATAACTTTCTCTGATCTTCAAAAGTCTCCTGTATACCCATTGGTACAAGGCAAGTCAGCCAAGAAAGCAAGTGCCAGTGAAGACAGTGCAAGGATTTGTTCTGAAGATTCCATGGACGAAGCTCAAGTGAAAGGAAAGATAGTTATTTGCGAAAACAGTGTCGAAGGAGGCGGTTCCGATTGGCAAGATCAGGCTGAAACAGTGAAGAATCTTGGAGGGGTCGGGGTAGTTTTGATTGATGACAACTCAAAATTAGTTGCAGAGAAGTTTCCTTCTCCTATGACAGTTATTAGCAAAAAGGATGGCGCTGAGGTCCTCTCCTATGTTAACTCAAGCGGGAATCCAGTTGCTACAATCCTGCCCACTGTGACCATAATAAACTATAAGCCAGCGCCTGCTATAACATACTTTTCATCCAGAGGGCCTAATCCCGCAGTATTAAATCTAATCAAGCCGGACATATCAGCACCAGGAGTGAACATTCTTGCAGCGTGGCTTGGCAATGATTCAAGCTCTACTCCACAAGCAACAAAGTTGCCACTCTTCAATGTGATCTCAGGAACTTCAATGTCTTGCCCGCATGTCTCTGGCGTAGTGGCCTTTCAATTTTCTAAAAAAAAAAAAAAATTTACAGCAATCCAAACGAATAACTTGGGAGCGCCAATGACTTTGGATACGGGATCAGTAGCCACACCTTATGATTATGGGGCAGGAGAAATATCAACAAATGGAGCATTACAACCAGGACTAGTTTATGAAACTAGTACAACAGACTACTTAAACTACCTTTGCAGTCGAGGTTATAATCGGTCCACCATTAAGAGCATCTCAACTACTGTTCCTGATGGGTTTGATTGCCCCAAGAATTCAACTGCAGATTATATATCCAACATGAACTACCCAACAATAGCAGTATCCGAATTGAAAGGCAAGGAAAGCAAGAAAGTAATCAGAACAGTTACAAATGTTGGTGGCGATGGCGATACAGTTTACACAGTCAGTGTAGACGCACCTGAGGAAGTAGATGTCAAAGTGATTCCAGAGAAATTTAATTTTTCAAAGAACAATGAGAAGCAGAGTTACCAAATGGTTTTCACCCTAACTAAACCCACACTGCAGAAAGAAGTCTTCGGTTCAATAACTTGGTCCAATGGAAAACATCGAGTTCGGAGTCCATTTGTCGTCACTGGTAAGAGTAGTGAGCCATAA 2436 45.77 MAHYMWIREKLDIFGSARALMKPTNSSFSTSYLPLFSTTSFHLSQADMQSISFFVFFVLVCVIFLLLSENAQIAAAAQGGKNGVYIVYMGSASGSRTDFLRLLSSVSRRNGNAVVHTYKHGFTGFAARLSEQEAHAMRQSPGVVSVFPDPILKLHTTHSWDFLVSQTSVKIDANPKSDPPTSSSQPYDTIIGILDTGIWPESESFSDKGMSPIPSRWKGTCMVGDDFTSSNCNRKIIGARFYESSESDGIRYHSPRDGAGHGTHVASTAAGSAVANASYYGLAEGTAKGGSPGSRIAMYRVCVADGCRGSSIMKAFDDAIADGVDILSLSLGAPYYFRPELTDDPIAIGAFHAVEKGITVVCSAGNDGPTSGSVVNDAPWIITVAASTIDRDFESDVVLGNKKVIKGEGITFSDLQKSPVYPLVQGKSAKKASASEDSARICSEDSMDEAQVKGKIVICENSVEGGGSDWQDQAETVKNLGGVGVVLIDDNSKLVAEKFPSPMTVISKKDGAEVLSYVNSSGNPVATILPTVTIINYKPAPAITYFSSRGPNPAVLNLIKPDISAPGVNILAAWLGNDSSSTPQATKLPLFNVISGTSMSCPHVSGVVAFQFSKKKKKFTAIQTNNLGAPMTLDTGSVATPYDYGAGEISTNGALQPGLVYETSTTDYLNYLCSRGYNRSTIKSISTTVPDGFDCPKNSTADYISNMNYPTIAVSELKGKESKKVIRTVTNVGGDGDTVYTVSVDAPEEVDVKVIPEKFNFSKNNEKQSYQMVFTLTKPTLQKEVFGSITWSNGKHRVRSPFVVTGKSSEP 811
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24883208 24887993 - Lsi04G017640.1 Lsi04g01764 661813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01764 811 PANTHER SUBTILISIN-LIKE PROTEASE SBT5.1 73 806 - -
Lsi04g01764 811 CDD PA_subtilisin_like 396 528 - -
Lsi04g01764 811 ProSitePatterns Serine proteases, subtilase family, serine active site. 596 606 IPR023828 -
Lsi04g01764 811 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 68 155 IPR037045 -
Lsi04g01764 811 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 73 806 IPR045051 -
Lsi04g01764 811 ProSitePatterns Serine proteases, subtilase family, histidine active site. 261 271 IPR022398 -
Lsi04g01764 811 Pfam Fibronectin type-III domain 706 804 IPR041469 -
Lsi04g01764 811 Pfam PA domain 437 512 IPR003137 -
Lsi04g01764 811 Gene3D Peptidase S8/S53 domain 188 668 IPR036852 GO:0004252|GO:0006508
Lsi04g01764 811 Gene3D - 390 535 - -
Lsi04g01764 811 Pfam Peptidase inhibitor I9 84 155 IPR010259 -
Lsi04g01764 811 PRINTS Subtilisin serine protease family (S8) signature 257 270 IPR015500 -
Lsi04g01764 811 PRINTS Subtilisin serine protease family (S8) signature 186 205 IPR015500 -
Lsi04g01764 811 PRINTS Subtilisin serine protease family (S8) signature 595 611 IPR015500 -
Lsi04g01764 811 SUPERFAMILY Subtilisin-like 118 700 IPR036852 GO:0004252|GO:0006508
Lsi04g01764 811 Pfam Subtilase family 189 621 IPR000209 GO:0006508|GO:0008236
Lsi04g01764 811 Gene3D - 672 807 - -
Lsi04g01764 811 CDD Peptidases_S8_3 152 610 IPR034197 -
Lsi04g01764 811 ProSiteProfiles Serine proteases, subtilase domain profile. 159 655 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01764 Lsi-Chr4:24883208 Lsi07g01435 Lsi-Chr7:20905120 1.25E-178 dispersed
Lsi03g00103 Lsi-Chr3:1440093 Lsi04g01764 Lsi-Chr4:24883208 2.08E-60 transposed
Lsi06g00869 Lsi-Chr6:18205003 Lsi04g01764 Lsi-Chr4:24883208 1.82E-07 transposed
Lsi08g00924 Lsi-Chr8:17636404 Lsi04g01764 Lsi-Chr4:24883208 0 transposed
Lsi10g00488 Lsi-Chr10:7018143 Lsi04g01764 Lsi-Chr4:24883208 2.21E-164 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01764 K25898 - csv:101213415 1302.35