Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01766 ATGGGGAAGGCTACCGATTATTCCTCTAATCACCGTTCGCCAAGTGGAACTGGTTTTACCGGAGATAATATCAACAGCTCCGAGTTCCGGCGGAAGAATCTTCAGTCTCCGTGGGCTCAAGTCGTCCGAGGCGAGGCAGAATCGATCTCACCCGTCGATCAGTCCCAGCTGTCGTCGTCGTCATCGCTGTCTTCGCTGGCGGTTTCTGCTACAGAAACCCCCGTTCCTGCTTCACCTCCGTCCGATAACTTTACATCTTCCGAGAACTACGACGCAAATGACGGGAATGCGATGACTACGTCAAAGAAACAGGCTTGGAATAAGCCTTCGAATGGCGTCGTTGAGGGTGGTCCTGTAATGGGGGCAGATTCTTGGCCTGCTCTTGCGGAATCCGCGAGGGCTTCACCCAAACTAGCGGCTGAGTCTCCTCCGAAGCCTACCGTCGAAGTATCAGTCCCTCCCTCTCAGGGACCTATCAATGTACCCCTTCAGCGGCAACCTACAAATAATGCCAAATCGAACCCGAGTCTGAAACATCCAGTGGTTGCTCGACAAAGACCCTCAAGGCGGGGTGGTGGTGGCGGTGGCAGTTCAGTGGGAGGGCCTGGACGAGGCTTTTATCGCCCTCCGCCACCTCCACCACCACCTCCCCCACCACCTTTTCCTGTATTTCAAATCCCTGCAAGTAGTTACCTGATACCAGCAATTCCTGATCCTTCTTCAGGAGAACCACTGTACAGGAGCAGTAACTGGGATCCGCGGGCTGTTGCAGGTTTTGTGCCTCAAATAAATTTTCCTACTGATCACCGAAACTTCTTTCCTAGGGGGAATTTAGCCCTCCATCCTCGTGGTGATAGTCACTACCATAACAATCGTGGGGGAAAACGTGGTCAAGATCGTGGAATATATCCTAATGCTCGAGATGCTCATTTTCAGCAGCACAGGCCTCATTCTAGAGGCTTTATGAGGCCTTTGCCACCTTACACTGCTCAGTTTTCCCCGGCTGTTAGACCTTATGGGAATCCTATGCCTCCTCCAGAGTTTGTCTATGTCCCTACATTGCCCTTGGAGCCTTACAGAGGCATGCCTTTCATGCCACGACCTGCAATGAACTATCCTGCTGTAGATCCCACTCTATCTGCATCACTAGTCAAGCAGATTGAATATTATTTCAGCGATGGTAATTTGGTAAAAGATGATTATTTAAGGTCCCAGATGGACGATCTAGGCTGGGTGCCACTTTCTCTGATAGCTACCTTTCCTATGGTAATGAGTTTGACAAACAATATTCAATGGATAGTAGAATCCTTAAGAACGTCAACTGAAGTGGAAGTGCAGGATAATAGGGTCAGACGGCGAAATGAGTGGAAGAAATGGGCAACAAAAGCCAATTGGTTTAGAACTGAATTGATCTCTTCTACTCCAAGTGGATCAGGTCATGATAGTCTAGCAACTTCTTTTCAAAGGGTCAGAGTGGATGAAGGTATGAACCAAAATATGGCCAGTGATAGCGATTCTCATAATACCAAGCGTACTACTGAGATACAACCTTCCGAGTCAGGTGATCGTTCGCAACGTGCTAATGGGGAGGTGAATCAGGATGTTCAGACTGATATCTGA 1620 49.07 MGKATDYSSNHRSPSGTGFTGDNINSSEFRRKNLQSPWAQVVRGEAESISPVDQSQLSSSSSLSSLAVSATETPVPASPPSDNFTSSENYDANDGNAMTTSKKQAWNKPSNGVVEGGPVMGADSWPALAESARASPKLAAESPPKPTVEVSVPPSQGPINVPLQRQPTNNAKSNPSLKHPVVARQRPSRRGGGGGGSSVGGPGRGFYRPPPPPPPPPPPPFPVFQIPASSYLIPAIPDPSSGEPLYRSSNWDPRAVAGFVPQINFPTDHRNFFPRGNLALHPRGDSHYHNNRGGKRGQDRGIYPNARDAHFQQHRPHSRGFMRPLPPYTAQFSPAVRPYGNPMPPPEFVYVPTLPLEPYRGMPFMPRPAMNYPAVDPTLSASLVKQIEYYFSDGNLVKDDYLRSQMDDLGWVPLSLIATFPMVMSLTNNIQWIVESLRTSTEVEVQDNRVRRRNEWKKWATKANWFRTELISSTPSGSGHDSLATSFQRVRVDEGMNQNMASDSDSHNTKRTTEIQPSESGDRSQRANGEVNQDVQTDI 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24898911 24903998 - Lsi04G017660.1 Lsi04g01766 661815

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01766 539 SUPERFAMILY Winged helix DNA-binding domain 374 461 IPR036390 -
Lsi04g01766 539 MobiDBLite consensus disorder prediction 1 225 - -
Lsi04g01766 539 MobiDBLite consensus disorder prediction 498 539 - -
Lsi04g01766 539 MobiDBLite consensus disorder prediction 49 108 - -
Lsi04g01766 539 MobiDBLite consensus disorder prediction 205 225 - -
Lsi04g01766 539 MobiDBLite consensus disorder prediction 513 539 - -
Lsi04g01766 539 Gene3D - 371 462 IPR036388 -
Lsi04g01766 539 MobiDBLite consensus disorder prediction 153 176 - -
Lsi04g01766 539 CDD LAM 383 452 - -
Lsi04g01766 539 SMART la 377 453 IPR006630 -
Lsi04g01766 539 PANTHER LA-RELATED PROTEIN 1B 40 520 - -
Lsi04g01766 539 Pfam La domain 383 438 IPR006630 -
Lsi04g01766 539 MobiDBLite consensus disorder prediction 1 34 - -
Lsi04g01766 539 ProSiteProfiles La-type HTH domain profile. 373 462 IPR006630 -
Lsi04g01766 539 PANTHER LUPUS LA PROTEIN-RELATED 40 520 IPR045180 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01766 K18757 LARP1; la-related protein 1 - csv:101220887 859.366
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00574 Lsi-Chr1:4596285 Lsi04g01766 Lsi-Chr4:24898911 4.73E-14 dispersed
Lsi01g00575 Lsi-Chr1:4600513 Lsi04g01766 Lsi-Chr4:24898911 2.23E-06 dispersed
Lsi03g00890 Lsi-Chr3:15850501 Lsi04g01766 Lsi-Chr4:24898911 3.93E-10 transposed
Lsi08g01099 Lsi-Chr8:19596832 Lsi04g01766 Lsi-Chr4:24898911 1.61E-07 transposed
Lsi10g00312 Lsi-Chr10:4994984 Lsi04g01766 Lsi-Chr4:24898911 1.15E-08 transposed
Lsi10g00936 Lsi-Chr10:13791623 Lsi04g01766 Lsi-Chr4:24898911 4.82E-26 transposed
Lsi01g00573 Lsi-Chr1:4582925 Lsi04g01766 Lsi-Chr4:24898911 9.44E-33 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1168 . Blo12g00877 . Bda03g00295 . . Bma04g00255 . . . Cma01g01985 . Car01g01556 . . . . . . . . . . . . . . . . . . . Cone7ag1906 Cone17ag1422 Cone20ag0060 Lsi04g01766 Csa03g04297 Chy04g00400 . . . Bda08g01199 Bda01g01544 Bpe02g01740 Bpe05g00153 . Bma05g00183 Sed13g1555 Cmo01g02043 . . . . . . Cpe02g00060 Bhi09g02069 Tan01g5044 Cmetu04g1063 . . Mch11g0099 . . . . . . . . . . . Cme04g00449
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003873 7 2 3 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01766 Lsi_Chr04 FPKM 1.057762 0.665669 7.285112 8.184341 21.465912 23.007336 21.823 4.377957 4.69374 3.700225