Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01768 ATGCCTGAAAGAAGAGAAAACAAAGTGGGGCCTCGATATTTAAAATTTAACAATGAAAAAATGGACATTTTGAGTTGTCTAAAAAATTATAGGGGACTCTGTTTTATCTTCATCCGCCATTTCCAATTATCTCTCTCTCTCTCTGTCTCTCGTTCGCTTTCAATGGCTCAAACCACGCCCAATCACACCCAGACAGTCTCCGGTTGGGCAGCCCATGATTCTTCCGGGAAGATCACTCCATATACTTTCAAACGCAGAGAAAACGGCCCCGAGGACGTGACCATAGAGATTTTGTACTGTGGAATATGCCATACTGATATTCACTACGCCAAAAACGAGTGGGGCATCACCATGTATCCCGTAGTTCCCGGGCATGAGATGACAGGAGTGATCACGAAAGTGGGAAGCAACGTGAAGAAGTTCAAAATAGGGGACAGAGTGGGGGTTGGTTGTATAGCCGCTTCCTGTTTGAACTGTGAGTTTTGTCAAGATTCCCAAGAAAACTACTGTGAAAATTTGCAGTTTACATACAATGGAATCTTCTGGGATGGGAGCATAACTTACGGGGGATACTCCAAAATGTTTGTTTCAGATCAGAGGTACGTGGTGCACATACCTGAAAGCCTGCCGATGGACGCAGCAGCACCGTTGCTGTGCGCCGGAATAACAGTGTTCACGCCGATGAAAGACCTCGGTCTGATCGATTCGGTGAGGAAGAAGGTGGGAGTGGTGGGGCTTGGAGGGCTGGGCCACCTAGCAGTAAAATTTGCAAAGGCGTTTGGGCACCATGTGACTGTGATTAGCACCTCTGCTTCAAAGAAACAAGAAGCTAAGGAGCGGCTTGGCGCTGACGATTTCATAGTCAGTAAAGATCCTAAGCAAATGCAGAGTTATAAGAGGTCGTTGGATTTCATATTGAACACAGTGTCGGCACAGCACTGTCTTGGACCAATCTTGGAACTGCTAAAAGTGAATGGGACATTGTCCATTGTGGGAGCTCCAGACAAGCCCATTCAATTGCCTTCTTTTCCTTTAATATTTGGTATAACAAAATCCCAACCTTTTTAG 1068 45.69 MPERRENKVGPRYLKFNNEKMDILSCLKNYRGLCFIFIRHFQLSLSLSVSRSLSMAQTTPNHTQTVSGWAAHDSSGKITPYTFKRRENGPEDVTIEILYCGICHTDIHYAKNEWGITMYPVVPGHEMTGVITKVGSNVKKFKIGDRVGVGCIAASCLNCEFCQDSQENYCENLQFTYNGIFWDGSITYGGYSKMFVSDQRYVVHIPESLPMDAAAPLLCAGITVFTPMKDLGLIDSVRKKVGVVGLGGLGHLAVKFAKAFGHHVTVISTSASKKQEAKERLGADDFIVSKDPKQMQSYKRSLDFILNTVSAQHCLGPILELLKVNGTLSIVGAPDKPIQLPSFPLIFGITKSQPF 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24917137 24921450 + Lsi04G017680.1 Lsi04g01768 661817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01768 355 Gene3D - 220 348 - -
Lsi04g01768 355 SUPERFAMILY GroES-like 71 233 IPR011032 -
Lsi04g01768 355 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 124 138 IPR002328 GO:0008270|GO:0016491
Lsi04g01768 355 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 209 347 IPR036291 -
Lsi04g01768 355 CDD CAD1 68 348 - -
Lsi04g01768 355 Gene3D - 69 219 - -
Lsi04g01768 355 Pfam Zinc-binding dehydrogenase 248 347 IPR013149 -
Lsi04g01768 355 PANTHER ALDEHYDE REDUCTASE 55 349 - -
Lsi04g01768 355 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE 6-RELATED 55 349 - -
Lsi04g01768 355 Pfam Alcohol dehydrogenase GroES-like domain 91 204 IPR013154 -
Lsi04g01768 355 SMART PKS_ER_names_mod 73 346 IPR020843 GO:0016491
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01768 Lsi-Chr4:24917137 Lsi10g00699 Lsi-Chr10:9771521 3.33E-107 dispersed
Lsi04g01768 Lsi-Chr4:24917137 Lsi03g00532 Lsi-Chr3:6272532 1.81E-93 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01768 K00083 - csv:101213170 559.681