Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01771 ATGGATCGGTACCACAGAGTTGAGAAGCCAAGGGCTGAGACTCCAATTGACGAGAATGAAATTCGGATTACAAGCCAAGGACGGATGCGCAACTATATCACATATGCCATGACCCTACTTCAGGTCTTAATGCGTACTGTGAATCCGTTGAGGTCAACCGCTGTCTCTCAATGGAATTTTCAAATTGTGGGTTCTCTTTGTGAGAAATTCCCTGCTCTCTGTGATTGGGGTGGGGTTAGGGGTTTAATCAATCTTGATATCGGTTATCTTTTACTTGCTTTGGTCTTCATAGGCATTTATGAAAAAGGTTCTAATGAAATTGTTTTCAAAGCAATGGGAAGGGCTATAAACAAGACTGTGACGATTGTGGAATTAATCAAGAGGCGAATTGTAGGTCTTCATCAGAATACCTCAATTGGCTCCACAGACATCACTGATACATGGGAGCCCTTGGAGGAAGGCCTTCTTCCATTGGAAACAACAAGGCATGTCTCGATGATTGTGATAACCCTTTCAAAGAAGGAATTAAATAAATCCTCTGTTGGGTATCAGCCTCCACTTCCTGCGGAGCTGGTGAAAACATTTGTAGAGTATGACTATGAGGGAGAAGGCTCACCTCATGATCAGGGTCCAGGACGAGGTAGAGGACGTGGCCGCAATGGCAGAGGAAGGTCTAGGGGTAGAGGACCCCCAGGTAATGGCTTTGTGGCTAATGAATATGATGATGGAGATTGGGACCGCAATAGGGGTGGTAATGGAAGAGGGAGGGGTCGAGGGAGGGGTGGTGGTAATTTCCGTGGACGTGGAAGAGGAGGGTACAATGGACCTCAATTTGATTTACAGCAAGATGGTGGATACAACCAAGACTTACCACCTCAAGGCCGTGGGCGTGGACGTGGAAGGGGTGGGCATCGTGGAAGGGGCCGTGGTTTCAGGACTAATGGAGGACCGATCCAAGCTGCTGCATGA 969 47.47 MDRYHRVEKPRAETPIDENEIRITSQGRMRNYITYAMTLLQVLMRTVNPLRSTAVSQWNFQIVGSLCEKFPALCDWGGVRGLINLDIGYLLLALVFIGIYEKGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTSIGSTDITDTWEPLEEGLLPLETTRHVSMIVITLSKKELNKSSVGYQPPLPAELVKTFVEYDYEGEGSPHDQGPGRGRGRGRNGRGRSRGRGPPGNGFVANEYDDGDWDRNRGGNGRGRGRGRGGGNFRGRGRGGYNGPQFDLQQDGGYNQDLPPQGRGRGRGRGGHRGRGRGFRTNGGPIQAAA 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24933702 24938426 - Lsi04G017710.1 Lsi04g01771 661820

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01771 322 SUPERFAMILY AlbA-like 89 188 IPR036882 GO:0003676
Lsi04g01771 322 Gene3D - 88 177 IPR036882 GO:0003676
Lsi04g01771 322 PANTHER RIBONUCLEASE P SUBUNIT P25 99 315 - -
Lsi04g01771 322 PANTHER ALBA DNA/RNA-BINDING PROTEIN 99 315 - -
Lsi04g01771 322 PANTHER RIBONUCLEASE P SUBUNIT P25 1 41 - -
Lsi04g01771 322 MobiDBLite consensus disorder prediction 201 215 - -
Lsi04g01771 322 MobiDBLite consensus disorder prediction 201 322 - -
Lsi04g01771 322 Pfam Alba 19 142 IPR002775 GO:0003676
Lsi04g01771 322 Gene3D - 11 48 IPR036882 GO:0003676
Lsi04g01771 322 PANTHER ALBA DNA/RNA-BINDING PROTEIN 1 41 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01771 - - - cmax:111476415 327.405
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g01771 Lsi08g01303 CCT
Lsi04g01771 Lsi08g01303 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01771 Lsi-Chr4:24933702 Lsi05g01107 Lsi-Chr5:18830940 2.83E-41 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g177 Blo01g01610 Blo12g00876 . Bda03g00296 . Bpe04g00256 Bma04g00257 Bma01g02384 . . Cma01g01987 Cma09g00089 Car01g01558 . . Cpe06g00052 . . . . . . . . Cla08g01406 Cam08g1886 Cec08g1463 Cco08g1596 Clacu08g1578 . Cre08g1361 . Cone7ag1910 . . Lsi04g01771 . Chy04g00397 . . . . . . . . . . Cmo01g02045 Cmo09g00087 . . . Car09g00077 . Cpe02g00058 . . . . . . . Cla05g01603 Cam05g1716 Cec05g1717 Cco05g1777 Clacu05g1705 Cmu05g1592 Cre05g1711 Lsi08g01303 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001144 2 5 1 4 2 2 4 2 2 2 2 2 3 2 2 3 2 5 3 2 2 2 2 2 2 1 2 8 2 3 78
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01771 Lsi_Chr04 FPKM 3.071453 3.582506 7.800939 8.775699 13.010826 14.216072 12.793129 0.459306 0.598069 0.740623