Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01774 ATGAAGGATGGAAATCGAGCTCTGACGAACGGTGGCTCTTACAGATCTTCTTCCAGATTTTACTCTCTTTTGGCTTCTGGAGATCGTGACTATCTTCTCTCTCCCACCGGAGCTCAGGTCAAAGTGTCAAATCTCGACAGCAAGGTTCTGGGCCTTTACTTCTCTGCCAACTGGTATCCGCCGTGCCGGAACTTCAACCAGATTCTGGTTCGAACGTACGAGGAGCTTAAAGATAATGGGTCAAATTTTGAAGTGGTTTATGTGTCCTCAGACGAGGATTCCGATGCCTTCAATGAGTATCGTGCGAGTATGCCGTGGCCGGCTATTCCGTTCTCTGACTTAGAAACAAAAATTGCTTTGAACAGGAAATTTGAGATTGAAGGTATTCCGTGTTTGATTATATTGCAGCCGCGTGATAATAAAGATGAAACGACGACGTTGCATGAAGGAGTGGAGGTTGTTTACCGTTATGGGGTGGATGCATTTCCATTTACAAAGGAGAGATTGGAGCAGCTGAAGGAGGAGGATAGAGAAAAGGAAGAAAATCAGACTTTGTTCACTTTGCTAATAAATCACAATAGAGATTATCTCTTGGGTCATCCTATCCCTAAACAGGTGCCTGTTGTTTCATTAGTAGGTAAGACCGTGGGGCTCTACTTCTCGGCGAAATGGTGTCTTCCCGGTATGTTCACGCCAAAGCTGATTTCGGTGTACAACAAGATAAAGCAAATGGTAGAGACGAAAGAAGACGAAGATTTTGAGATTGTTTTCGTGTCAAGTGATCGAGACGAAGACTCGTTCCATTCTTACTTTGGTTCAATGCCATGGCTAGCATTGCCATTTGGAGACCCAATGATTAAAGAACTTGCCAAACATTTTGACGTGCAGGGCATCCCTTGTTTGATAATCTTAGGTCCAAATGGCAAAACAGTCACCAAACAAGGTAGAAATCTAATAAACTTGTACAGGGAAAACGCTTATCCGTTCACGGAAGCAAAATTGGAGGAGTTGGTGAAAGAAATGGAGGAAGAGGCGAAAAAGCTCCCAACAACGGTACACCATGTCGGGCATAGACACGAGCTGAATTTGGTGTCCGAAGGAAATGGGGGAGGACCTTTCATCTGCTGCAAGTGTGATGAGCAGGGTTGTGGATGGGCGTATCAGTGCCTCGAATGTGGATTTGAGGTGCATCCAAAGTGCGTCGAGACATGCAACCGCGACCCTCCCATTAATGGAAGGTGA 1242 45.25 MKDGNRALTNGGSYRSSSRFYSLLASGDRDYLLSPTGAQVKVSNLDSKVLGLYFSANWYPPCRNFNQILVRTYEELKDNGSNFEVVYVSSDEDSDAFNEYRASMPWPAIPFSDLETKIALNRKFEIEGIPCLIILQPRDNKDETTTLHEGVEVVYRYGVDAFPFTKERLEQLKEEDREKEENQTLFTLLINHNRDYLLGHPIPKQVPVVSLVGKTVGLYFSAKWCLPGMFTPKLISVYNKIKQMVETKEDEDFEIVFVSSDRDEDSFHSYFGSMPWLALPFGDPMIKELAKHFDVQGIPCLIILGPNGKTVTKQGRNLINLYRENAYPFTEAKLEELVKEMEEEAKKLPTTVHHVGHRHELNLVSEGNGGGPFICCKCDEQGCGWAYQCLECGFEVHPKCVETCNRDPPINGR 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24963360 24969239 + Lsi04G017740.1 Lsi04g01774 661823

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01774 413 Pfam C1 domain 357 401 IPR004146 -
Lsi04g01774 413 SUPERFAMILY Cysteine-rich domain 345 402 IPR046349 -
Lsi04g01774 413 ProSiteProfiles Thioredoxin domain profile. 196 343 IPR013766 -
Lsi04g01774 413 Pfam Thioredoxin-like 48 138 IPR012336 -
Lsi04g01774 413 Pfam Thioredoxin-like 213 309 IPR012336 -
Lsi04g01774 413 Coils Coil 327 347 - -
Lsi04g01774 413 Gene3D Glutaredoxin 25 166 - -
Lsi04g01774 413 Gene3D Glutaredoxin 198 331 - -
Lsi04g01774 413 SUPERFAMILY Thioredoxin-like 205 313 IPR036249 -
Lsi04g01774 413 PANTHER THIOREDOXIN 16 400 - -
Lsi04g01774 413 SUPERFAMILY Thioredoxin-like 32 138 IPR036249 -
Lsi04g01774 413 ProSiteProfiles Thioredoxin domain profile. 22 174 IPR013766 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01774 K17609 NXN; nucleoredoxin [EC:1.8.1.8] - csv:101212204 731.865
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01774 Lsi-Chr4:24963360 Lsi08g00152 Lsi-Chr8:3162627 7.86E-34 dispersed
Lsi04g01774 Lsi-Chr4:24963360 Lsi08g01117 Lsi-Chr8:19813869 3.35E-75 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g172 . Blo12g00875 . . . Bpe04g00258 Bma04g00259 . . . . Cma09g00088 . . . Cpe06g00051 . . . . . . . . . . . . . . . . . . . Lsi04g01774 . Chy04g00395 . . . . . . . . . . . Cmo09g00086 . . . Car09g00076 . . . . . . . . . Cla05g01601 Cam05g1712 Cec05g1712 Cco05g1769 Clacu05g1699 Cmu05g1588 Cre05g1707 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012145 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01774 Lsi_Chr04 FPKM 2.365682 2.540216 14.250419 17.723124 6.71351 5.805647 8.038519 9.479287 7.616766 8.817351