Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01780 ATGGATTTTCTCCCCTTATTCTTCACCGGAACTTTCCTGGCCGCCGGCTTTTACTGGTTCTTCTTCATCTATGGCTCCGCCGAACGCCAAGGCAAACTCGCCGTCAACCTCTCTGGCGGTTCAATCTCCTCCGAGAAAATTCAGGACAAGTACAAACAGTACTGGTCCTTTTTCCGCCTCCCCGAGAAGATCGAAACCACCGAAAAAGTCCCCGATTTCGTAGATACCTTTTACAACTTAGTCACTGACATTTACGAGTGGGGCTGGGGCCAGTCCTTCCATTTCGCCCGTCCGATTCCGGGAAAGTCTTACAAAGAAGCCACGCGCCTCCACGAAGAAATGGTGGCCGATCTAGTCAAAGCCAAACCCGGAGATCGAATTCTCGACGTCGGATGTGGCGTCGGTGGGCCGATGCGGTCCATCGCCGCGCACTCCAAAGCTAATGTGGTCGGAATCACAATCAACGACTACCAAGTTCAACGTGCTAGATTGCACAACAGAAAAGCCGGACTGGACTCACTGTGTGAAGTGGTATGTGGAAATTTCCTAGAAATGCCCTTTTCGGAAGAGAGCTTCAACGGCGCTTACGCCATTGAAGCAACGTGTCACGCGCCGAAGCTTGAAGATGTTTACTCGGAAATTTACAGAGTATTGAAGCCGGGTTCGTTATTCGTGTCGTTGGAATGGGTTTCGACGGACAAATACGATACTGCAAATCCAGAGCATGTGAAGATCATTGAAGAAATTGCAAGAGGTAACGCTTTGCCAGGAGTAAAATCGTACAATGACGTGGCGAAAGCGGCTAAGAAAGTGGGATTTGAAGTTTTGAAGGAGGAAGATCTGGCCAAGCCGCCGGCGTTGCCGTGGTGGGACCGATTGAAAATGGGCCGAGTTGCGTACTGGAGGAATCATGTCCTCGTGACGATTCTCGCCGCGTTGAGAATCGCTCCGAAAGGGACTTTGGAAGTCCATGAGATGTTGGTGGAGGCTGCCGATTATTTAACCCGAAGCGGCGACGCTGGAATCTTCTCGCCGATGCATTTGATCGTCTGTAGAAAACCTGAATCGTCGAAATCGTTTTAG 1083 50.51 MDFLPLFFTGTFLAAGFYWFFFIYGSAERQGKLAVNLSGGSISSEKIQDKYKQYWSFFRLPEKIETTEKVPDFVDTFYNLVTDIYEWGWGQSFHFARPIPGKSYKEATRLHEEMVADLVKAKPGDRILDVGCGVGGPMRSIAAHSKANVVGITINDYQVQRARLHNRKAGLDSLCEVVCGNFLEMPFSEESFNGAYAIEATCHAPKLEDVYSEIYRVLKPGSLFVSLEWVSTDKYDTANPEHVKIIEEIARGNALPGVKSYNDVAKAAKKVGFEVLKEEDLAKPPALPWWDRLKMGRVAYWRNHVLVTILAALRIAPKGTLEVHEMLVEAADYLTRSGDAGIFSPMHLIVCRKPESSKSF 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25001145 25002227 - Lsi04G017800.1 Lsi04g01780 661829

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01780 360 Pfam Sterol methyltransferase C-terminal 292 355 IPR013705 GO:0006694|GO:0008168
Lsi04g01780 360 PANTHER METHYLTRANSFERASE 1 356 - -
Lsi04g01780 360 CDD AdoMet_MTases 126 230 - -
Lsi04g01780 360 Pfam Methyltransferase domain 128 225 IPR013216 GO:0008168
Lsi04g01780 360 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 76 355 IPR029063 -
Lsi04g01780 360 Gene3D Vaccinia Virus protein VP39 44 307 IPR029063 -
Lsi04g01780 360 PANTHER - 1 356 IPR044625 GO:0008168|GO:0032259
Lsi04g01780 360 ProSiteProfiles SAM-dependent methyltransferase Erg6/SMT-type domain profile. 77 354 IPR030384 GO:0008168
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01780 K08242 E2.1.1.143; 24-methylenesterol C-methyltransferase [EC:2.1.1.143] - csv:101220177 702.205
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01198 Lsi-Chr3:22401784 Lsi04g01780 Lsi-Chr4:25001145 1.03E-80 dispersed
Lsi03g01199 Lsi-Chr3:22431517 Lsi04g01780 Lsi-Chr4:25001145 2.30E-70 dispersed
Lsi04g01780 Lsi-Chr4:25001145 Lsi10g00224 Lsi-Chr10:3636395 5.92E-16 dispersed
Lsi04g01780 Lsi-Chr4:25001145 Lsi06g01286 Lsi-Chr6:23414624 1.30E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g160 . . . . . . . . . . . Cma09g00083 . . . Cpe06g00047 . . . . . . . . . . . . . . . . . . . Lsi04g01780 . Chy04g00390 . . Blo18g00762 . Bda01g01547 Bpe02g01743 . Bma01g00715 . Sed12g1477 . Cmo09g00082 . . . Car09g00072 . Cpe02g00582 Bhi09g02717 Tan01g4064 Cmetu07g2081 . . Mch11g0857 . Cla05g01596 Cam05g1707 Cec05g1707 Cco05g1763 Clacu05g1694 Cmu05g1583 Cre05g1701 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007184 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 2 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01780 Lsi_Chr04 FPKM 0.0 3.810549 0.0 0.0 0.0 0.0 0.207067 2.925918 3.374791 0.0