Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01782 ATGGCTATGGATGATACCGAGAGCTGTAGTAGTAGAGCTGTGGATGATTTTTCGGCTCAGACTTGGAGACAGAAGCAGAAGGTTGGTGTTTACGACGAAGTTCTTCGTCGACTCAGGCTGTCGCACGAGGCGGAGACCAGCCTTCCTGGTTTCGAGGATGAACTTTGGACTCATTTTCATCGACTTCCTGCTAGGTATGCTATGGACGTCAACGTAGAGAGGGCTCAAGATGTTCTCATGCACAAAAATCTTCTCTACATGGCACATGATCCTGCTACTCGACCTGCAATTGATGTTCGTCTCGTACAGGTTCATTCATCTCCTGGCAGAAACTTTAGCAAGTCTGTTCATTCAAACTTGAAGGAAAAAGTGGACCAGCGGTTTTCTGGTTATGACAGCAATCAGAGGCATGACACCACCCCCCACCAGCATTTGGTTCATCAGCAGAGGCCAATGCATGAAATTACAATATCAACAATTGACAAGCCAAAGCTGCTCAGTCAGTTGACGTCCTTACTTTCTGAGATTGGGCTGAATATTCAAGAAGCTCATGCTTTTTCAACAACAGATGGCTTTTCCTTGGATGTTTTTGTAGTTGATGGTTGGGCAATTGAGGATACCAAGCAGCTAAAAGATATACTGGCAGAAGAAATATCAAAGATTCAGAAAAGGCATCCTCTATTTACACCTTGCGTCTTCCGTACTGGGAAGCAAGACAAAATTGGAGTCAAGTTCATCACAAAGTATGTCAACATTCCAAGGGACGAAGTTGATGTATGGGAAATTGATGCGACCCTGCTAGTCTTTGAGAAGAAAATTGCATCTGGATCTCTTAGTGACTTGTATAAAGGCACCTTCTATGGTCAAGATGTGGCTATTAAGCTTCTAAAAGATGAAAACTTGAATGAGACTGTACGGCGGGAATTTGCTCAAGAAATTCATATCATGAGAAAACTTCGGCATAAGAATGTTGTCCAATTTATTGGTGCATCTACCAGGCCTCCACGCTTTTTCATTGTTACAGTTTTCAAAGTCATGCTTACTGCTATTCAATTTTATGACAATATTATCTATCTTCATTTCATAACCGTTGATCTGGTTGTCAAGGTAGCTGATTTTGGTGTTGCTAGAGTGCAAGCTCAATCTGGTGTGATGACTGCAGAAACTGGAACATATCGTTGGATGGCTCCAGAGGTTATTGAGCACAAACCATATGATCGTAAAGCTGATGTTTATAGCTTTGGGATAGTGTTGTGGGAGCTGCTTACAGGACAGCTGCCTTATGATAACTTGACTCCGTTACAAGCAGCAATAGGCGTGGTCCAGAAGGGTCTGAGGCCTAAGATTCCGAGGCATGCTCATCCAATGATCGTCGATTTGCTCAAGAAATGCTGGCTGCAGGATCCATCTTTGAGACCTGAATTCTCAGAAATTACGAGACTTCTACAGCAGACGGCGATGAAGGAGGCACTTCATGTTCCTGGGACAGATTATATGATAAGAAACTTTGGAGTGACAGGAACCATCTGGAAGATGATACAAAATTTTGGGCTGGAGAGGACGTTCTATGGAGGAGCAAGGATACGGTATCTAACTACATATAAGTATCTTTTCACATATAAATTTGCTTTCACATAG 1638 42.8 MAMDDTESCSSRAVDDFSAQTWRQKQKVGVYDEVLRRLRLSHEAETSLPGFEDELWTHFHRLPARYAMDVNVERAQDVLMHKNLLYMAHDPATRPAIDVRLVQVHSSPGRNFSKSVHSNLKEKVDQRFSGYDSNQRHDTTPHQHLVHQQRPMHEITISTIDKPKLLSQLTSLLSEIGLNIQEAHAFSTTDGFSLDVFVVDGWAIEDTKQLKDILAEEISKIQKRHPLFTPCVFRTGKQDKIGVKFITKYVNIPRDEVDVWEIDATLLVFEKKIASGSLSDLYKGTFYGQDVAIKLLKDENLNETVRREFAQEIHIMRKLRHKNVVQFIGASTRPPRFFIVTVFKVMLTAIQFYDNIIYLHFITVDLVVKVADFGVARVQAQSGVMTAETGTYRWMAPEVIEHKPYDRKADVYSFGIVLWELLTGQLPYDNLTPLQAAIGVVQKGLRPKIPRHAHPMIVDLLKKCWLQDPSLRPEFSEITRLLQQTAMKEALHVPGTDYMIRNFGVTGTIWKMIQNFGLERTFYGGARIRYLTTYKYLFTYKFAFT 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25024973 25031302 + Lsi04G017820.1 Lsi04g01782 661831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01782 545 ProSiteProfiles Protein kinase domain profile. 170 487 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g01782 545 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 365 488 - -
Lsi04g01782 545 ProSiteProfiles ACT domain profile. 154 230 IPR002912 -
Lsi04g01782 545 SUPERFAMILY ACT-like 152 219 IPR045865 -
Lsi04g01782 545 Gene3D - 152 225 - -
Lsi04g01782 545 SUPERFAMILY Protein kinase-like (PK-like) 249 481 IPR011009 -
Lsi04g01782 545 Coils Coil 204 224 - -
Lsi04g01782 545 Gene3D Transferase(Phosphotransferase) domain 1 344 499 - -
Lsi04g01782 545 PANTHER SERINE/THREONINE-PROTEIN KINASE STY46-LIKE 365 488 - -
Lsi04g01782 545 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 12 343 - -
Lsi04g01782 545 PANTHER SERINE/THREONINE-PROTEIN KINASE STY46-LIKE 12 343 - -
Lsi04g01782 545 Gene3D Phosphorylase Kinase; domain 1 258 343 - -
Lsi04g01782 545 Pfam Protein tyrosine and serine/threonine kinase 268 342 IPR001245 GO:0004672|GO:0006468
Lsi04g01782 545 Pfam Protein tyrosine and serine/threonine kinase 362 481 IPR001245 GO:0004672|GO:0006468
Lsi04g01782 545 CDD STKc_MAP3K-like 273 482 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi04g01782 Lsi08g00545 CCT
Lsi04g01782 Lsi08g00545 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01782 Lsi-Chr4:25024973 Lsi08g00545 Lsi-Chr8:13577550 1.58E-97 dispersed
Lsi11g01226 Lsi-Chr11:20851614 Lsi04g01782 Lsi-Chr4:25024973 2.31E-21 dispersed
Lsi11g01225 Lsi-Chr11:20841418 Lsi04g01782 Lsi-Chr4:25024973 1.07E-108 wgd
Lsi04g01782 Lsi-Chr4:25024973 Lsi07g01075 Lsi-Chr7:16102866 4.31E-173 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83593 PF07714 PK_Tyr_Ser-Thr 1.10E-29 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01782 - - cpep:111789352 775.778