Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01783 ATGAAAGAAGATTGTTGGAAGCAAAATTGTGTAGCGATGAAGGAAGACGGAGATGAATCAAAGAAGTTCAACAGTAAAGAAGAAGAGAATGTGGTAGGTTACCACAGCAACAACGTAAAGAAAGTTAGGTTAAATTCAACTCTCGCTGCTCTGCTCGACGATCCTATTCTCGCCGATATTCCCAAGAATCCCACCCTATCGCACGTCGACACTCTCATCAGCCTCGAATTGGGCAGCGCCATGCGCATCTACGTCCTTAAGCTCGATGGCACCGCCATTGATGTGCCGATCATGAATTCCGCAACATTGAAGGACTTGAAGCTTGCGATCAAGAAGAAAGTAAACGAGATGGAACAATCCAAGATGGGGCATCGCCACATTTCATGGAAGCATGTGTGGTCTAATTTTTGCTTAGCACACCACAACGAGAAGATTCTTGACGATAGCTCTACGCTTCAGGATTTTGGAATCCGTAACAATTCTCAGATCCATTTTGTCCCATACGTCATGTCAAAGAATTCGAGAAGGCATTCTAGGAGGAGAAAACACCGGTTCTTTCATGGTCTCAACAAATGGGCATGA 582 44.67 MKEDCWKQNCVAMKEDGDESKKFNSKEEENVVGYHSNNVKKVRLNSTLAALLDDPILADIPKNPTLSHVDTLISLELGSAMRIYVLKLDGTAIDVPIMNSATLKDLKLAIKKKVNEMEQSKMGHRHISWKHVWSNFCLAHHNEKILDDSSTLQDFGIRNNSQIHFVPYVMSKNSRRHSRRRKHRFFHGLNKWA 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25051704 25053307 + Lsi04G017830.1 Lsi04g01783 661832

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01783 193 PANTHER U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN 24 191 IPR039690 GO:0000398|GO:0005689
Lsi04g01783 193 Pfam Ubiquitin-like domain 81 168 IPR040610 -
Lsi04g01783 193 CDD Ubl_SNRNP25 80 166 IPR040610 -
Lsi04g01783 193 PANTHER U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN 24 191 - -
Lsi04g01783 193 SUPERFAMILY Ubiquitin-like 76 172 IPR029071 -
Lsi04g01783 193 Gene3D - 75 178 - -
Lsi04g01783 193 ProSiteProfiles Ubiquitin domain profile. 81 166 IPR000626 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01783 K13153 SNRNP25; U11/U12 small nuclear ribonucleoprotein 25 kDa protein - csv:101218865 310.842
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01783 Lsi-Chr4:25051704 Lsi04g02123 Lsi-Chr4:28359907 9.62E-12 dispersed
Lsi04g01783 Lsi-Chr4:25051704 Lsi06g00994 Lsi-Chr6:19973396 4.95E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g150 . Blo12g00870 . Bda03g00303 . Bpe04g00265 Bma04g00267 . . . . Cma09g00080 . . . Cpe06g00044 . . . . . . . . . . . . . . . . . . . Lsi04g01783 Csa04g02673 . . . . . . . . . . Sed01g2460 . Cmo09g00079 . . . . . . Bhi09g02942 Tan01g5062 Cmetu07g1712 . Hepe01g2310 Mch11g0084 . Cla05g01593 Cam05g1701 Cec05g1701 Cco05g1751 Clacu05g1688 Cmu05g1577 Cre05g1694 . . Chy07g00365 Cme07g00084
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010409 1 2 1 2 1 1 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 0 1 1 1 3 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01783 Lsi_Chr04 FPKM 7.524437 6.888915 1.997743 1.98005 0.0 0.0 0.0 0.0 0.0 0.0