Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01784 ATGTCACCGCCGGCTAGGACTAAGAGCTGGAACGGTGGACTCGATAAACATTATCCTCCGTCGCTCGCCACCCACGATGAAGTTATTTCCGACCCCATTGTTTTTTGGGATACTTTGAGGCGTTTCCATTTTATGATGAACACAAAGTTCATGATTCCTGTGATTGGAGGGAAGGAGCTAGACTTGCATGTTTTATATTCAGAGGTTGTTGCAGAGAAGAAATGGAGAGAAGTTGGAAGTGTATTCAAGTTTTCTCCTACAACGACGAGTGCTTCCTTTGTATTGAGAAAACATTATCTAAGTCTTCTTTACCATTACGAGCAAGTTTATTTGTTCGGCCGTCAGGGCCCCATCTGTGTCCCTCAAGCGCCATTTCCTTTTGGTAGCCCTACCAGTGAAAACGAATTGGCTCTTGTGGAATATACTCCCAAAACTACGTCGTTTTCCCCTGGTCCGCCCGCTGAAGTTACTGGAACAATTGATGGGAAATTCGACTGTGGTTACCTTGTGACTGTGAAATTGGGATCTGAGGTTCTAAGAGGAGTTCTTTACCATCCAGACCAGCCACCTCCGTCGGATCTCCGCCCTCAGTCTACCAACGCCATTGTACCGTATACCGGCGTCAGACATCATCGACATTCCGGTCGGCGGCACCGGAGGAGCCGGAGAAAGGGAGATCCGAACCACCCAAAACCAAACAGAAGTGGGTATAATTTCTTCTTTGCAGAGAAGCATTACAAGCTCAAATCTCTGTACCCAAACAGAGAGAGGGAGTTCACTAAGATGATTGGAGAGTCGTGGAACAATCTTAGCCCTGAAGAAAGGATGGTTTATCAAAACATTGGGCTGAAAGACAAGGAAAGATACAAGAGAGAGTTGAAAGAGTATAAGGAGAAAATGAGGCAGGCAACTGATGTTGATGGAGCTACTAACTATTCAAAACATGGAGAGTAA 954 45.7 MSPPARTKSWNGGLDKHYPPSLATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKELDLHVLYSEVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQGPICVPQAPFPFGSPTSENELALVEYTPKTTSFSPGPPAEVTGTIDGKFDCGYLVTVKLGSEVLRGVLYHPDQPPPSDLRPQSTNAIVPYTGVRHHRHSGRRHRRSRRKGDPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYKRELKEYKEKMRQATDVDGATNYSKHGE 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25054509 25056400 - Lsi04G017840.1 Lsi04g01784 661833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01784 317 ProSiteProfiles ARID domain profile. 29 111 IPR001606 GO:0003677
Lsi04g01784 317 Gene3D High mobility group box domain 214 310 IPR036910 -
Lsi04g01784 317 CDD HMGB-UBF_HMG-box 230 294 - -
Lsi04g01784 317 SMART bright_3 30 112 IPR001606 GO:0003677
Lsi04g01784 317 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 15 304 - -
Lsi04g01784 317 SUPERFAMILY ARID-like 26 119 IPR036431 GO:0003677
Lsi04g01784 317 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 230 297 IPR009071 -
Lsi04g01784 317 SMART ARID_2 26 107 - -
Lsi04g01784 317 MobiDBLite consensus disorder prediction 209 227 - -
Lsi04g01784 317 Gene3D - 24 117 IPR036431 GO:0003677
Lsi04g01784 317 MobiDBLite consensus disorder prediction 206 237 - -
Lsi04g01784 317 SMART hmgende2 229 298 IPR009071 -
Lsi04g01784 317 Pfam HMG (high mobility group) box 230 297 IPR009071 -
Lsi04g01784 317 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 15 304 - -
Lsi04g01784 317 Coils Coil 286 306 - -
Lsi04g01784 317 Pfam ARID/BRIGHT DNA binding domain 35 107 IPR001606 GO:0003677
Lsi04g01784 317 CDD ARID_HMGB9-like 31 107 IPR045303 GO:0003677
Lsi04g01784 317 SUPERFAMILY HMG-box 227 301 IPR036910 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01784 Lsi-Chr4:25054509 Lsi09g01146 Lsi-Chr9:18362625 4.05E-68 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25225 PF01388 ARID 5.20E-11 CL0123 Lsi TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01784 - - csv:101219101 596.66