Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01784 ATGTCACCGCCGGCTAGGACTAAGAGCTGGAACGGTGGACTCGATAAACATTATCCTCCGTCGCTCGCCACCCACGATGAAGTTATTTCCGACCCCATTGTTTTTTGGGATACTTTGAGGCGTTTCCATTTTATGATGAACACAAAGTTCATGATTCCTGTGATTGGAGGGAAGGAGCTAGACTTGCATGTTTTATATTCAGAGGTTGTTGCAGAGAAGAAATGGAGAGAAGTTGGAAGTGTATTCAAGTTTTCTCCTACAACGACGAGTGCTTCCTTTGTATTGAGAAAACATTATCTAAGTCTTCTTTACCATTACGAGCAAGTTTATTTGTTCGGCCGTCAGGGCCCCATCTGTGTCCCTCAAGCGCCATTTCCTTTTGGTAGCCCTACCAGTGAAAACGAATTGGCTCTTGTGGAATATACTCCCAAAACTACGTCGTTTTCCCCTGGTCCGCCCGCTGAAGTTACTGGAACAATTGATGGGAAATTCGACTGTGGTTACCTTGTGACTGTGAAATTGGGATCTGAGGTTCTAAGAGGAGTTCTTTACCATCCAGACCAGCCACCTCCGTCGGATCTCCGCCCTCAGTCTACCAACGCCATTGTACCGTATACCGGCGTCAGACATCATCGACATTCCGGTCGGCGGCACCGGAGGAGCCGGAGAAAGGGAGATCCGAACCACCCAAAACCAAACAGAAGTGGGTATAATTTCTTCTTTGCAGAGAAGCATTACAAGCTCAAATCTCTGTACCCAAACAGAGAGAGGGAGTTCACTAAGATGATTGGAGAGTCGTGGAACAATCTTAGCCCTGAAGAAAGGATGGTTTATCAAAACATTGGGCTGAAAGACAAGGAAAGATACAAGAGAGAGTTGAAAGAGTATAAGGAGAAAATGAGGCAGGCAACTGATGTTGATGGAGCTACTAACTATTCAAAACATGGAGAGTAA 954 45.7 MSPPARTKSWNGGLDKHYPPSLATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKELDLHVLYSEVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQGPICVPQAPFPFGSPTSENELALVEYTPKTTSFSPGPPAEVTGTIDGKFDCGYLVTVKLGSEVLRGVLYHPDQPPPSDLRPQSTNAIVPYTGVRHHRHSGRRHRRSRRKGDPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYKRELKEYKEKMRQATDVDGATNYSKHGE 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25054509 25056400 - Lsi04G017840.1 Lsi04g01784 661833

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01784 317 ProSiteProfiles ARID domain profile. 29 111 IPR001606 GO:0003677
Lsi04g01784 317 Gene3D High mobility group box domain 214 310 IPR036910 -
Lsi04g01784 317 CDD HMGB-UBF_HMG-box 230 294 - -
Lsi04g01784 317 SMART bright_3 30 112 IPR001606 GO:0003677
Lsi04g01784 317 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 15 304 - -
Lsi04g01784 317 SUPERFAMILY ARID-like 26 119 IPR036431 GO:0003677
Lsi04g01784 317 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 230 297 IPR009071 -
Lsi04g01784 317 SMART ARID_2 26 107 - -
Lsi04g01784 317 MobiDBLite consensus disorder prediction 209 227 - -
Lsi04g01784 317 Gene3D - 24 117 IPR036431 GO:0003677
Lsi04g01784 317 MobiDBLite consensus disorder prediction 206 237 - -
Lsi04g01784 317 SMART hmgende2 229 298 IPR009071 -
Lsi04g01784 317 Pfam HMG (high mobility group) box 230 297 IPR009071 -
Lsi04g01784 317 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 15 304 - -
Lsi04g01784 317 Coils Coil 286 306 - -
Lsi04g01784 317 Pfam ARID/BRIGHT DNA binding domain 35 107 IPR001606 GO:0003677
Lsi04g01784 317 CDD ARID_HMGB9-like 31 107 IPR045303 GO:0003677
Lsi04g01784 317 SUPERFAMILY HMG-box 227 301 IPR036910 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01784 - - - csv:101219101 596.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01784 Lsi-Chr4:25054509 Lsi09g01146 Lsi-Chr9:18362625 4.05E-68 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g149 Blo01g01615 . . . Bpe02g00331 . . Bma01g02389 . . Cma01g01993 Cma09g00079 Car01g01565 . . Cpe06g00043 . . . . . . . . . . . . . . . . Cone7ag1916 Cone17ag1432 Cone20ag0052 Lsi04g01784 Csa04g02674 . . . . . . . . . . Sed01g2459 Cmo01g02054 Cmo09g00078 . . . Car09g00069 . Cpe02g00052 Bhi09g02941 Tan01g5063 Cmetu07g1207 . Hepe01g2311 Mch11g0083 . Cla05g01592 Cam05g1700 Cec05g1699 Cco05g1750 Clacu05g1687 Cmu05g1576 Cre05g1693 . . Chy07g00366 Cme07g00083
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi04g01784 . 16 301 ARID Transcription Factor Family AT1G76110 63.8 4.0e-103 371.7
Lsi07g00647 . 1 783 ARID Transcription Factor Family AT3G43240 58.4 8.4e-263 903.3
Lsi02g02861 . 2 775 ARID Transcription Factor Family AT3G43240 57.1 8.2e-258 886.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006578 1 1 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25225 PF01388 ARID 5.20E-11 CL0123 Lsi TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01784 Lsi_Chr04 FPKM 0.0 0.0 0.0 1.330452 10.981233 6.661466 11.212909 1.479687 1.937829 1.302173