Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01788 ATGGTCTCATTCCGCTGTGCCCTTCATTATATCCCGTTATCCGTCTCCCCCTTCTTCGCGCCTCGCCTCCAACCTCTTCCTCTTCGTCTTCTCCAAGTTTCTTCTTCCTCTTCCTTTTCTCTTTCTGCATTTCCCTCTCTTCACCCTTTTTCTTCCTTCTCCAGCCCCTCCCGACGCAGGATGGGATCTCTCTCCGCCCTACTCGATCCTTTGCTCTACCCTACTGCTCGCAGAGACGACTCTGTTGTCGAGGATTATCACGGCCTTCAGATCGCCGACCCTTACCGATGGCTTGAAGATCCTGACGCTGACGAAGTGAAGGAGTTCGTGCAGGAACAGGTGAAATTGACGGAATCGGTGCTTCAGAAGTGTGATACTAGAGAAAAGCTTCGCGCGAAGATCACTGAACTCTTTGATCATCCGCGATATGAACCGCCGTTTAAGCGAGGGAATAAGTACTTCTACTATCACAATACTGGTCTTCAAGCGCAGAGCGTTCTTTATGTTCAGGATAGTTTGGATGGAGAACCTGAGGTTTTGCTGGATCCTAATGCGCTAAGCGAAGACGGAACAGTCTCGTTGAGTAATCTTTCCGTCAGCAAGGATGCAAAATACTTGGCTTATGGCCTTAGTTCAAGCGGCAGTGATTGGGTGACAATTAAGGTCATGCGAATCGATGATAAGAAAACTGAACCGGATACATTATCATGGGTCAAGTTTTCAAGTATTAGTTGGACAGTTGATGGCAAAGGTTTTTTCTACAGCCGCTATCCTGCTCCCAAAGAAGTAGGAACTTTAGATGCTGGTACTGAGACGAATGCAAATCTTTATCACGAATTATACTACCATTTCTTGGGAAGTGATCAATCCGATGATGTATTATGTTGGAGAGATCAAGACCATCCTAAATACCTCTTTTCGGCCTCTGTTACTGATGATGGAAAGGTAATAACCCCCTGTTTCATGTATGTCCTTATGGAAATTGAGGAGGGTTGTGATCCAGTCAACAAATTTTACTATTGTAACATATCAGCACTTCCTAATGGACTTGAAGGCTTCAAGGGGAAAAATGACATGCTTCCTTTTACAAAACTTATTGACGACTTTGATGCTCAGTATCATGCCATTGCAAACGATGATACATTGTTCACCTTTATAACGAATAAAAATGCTCCAAAATATAAGCTTGTAAGGGTTGATCTGAATGATCCTACAGTATGGACAGAATTACTTCCAGAATCTGAAAAGGATGTACTAGAATCTGCATGTGCTGTTAATGGCGACCAAATGATAGTGAGCTACTTGAGTGATGTTAAATACGTTCTGCAGATAAGGGACTTGAAGTCAGGTTCCTTGTTGCATCAGCTACCCATCGATATTGGCTCAGTTTATGGAATCTCAGCTAGGCGTGAAGATAGTCTAATTTTCATAGGGTTTACTAGCTTTCTTACACCTGGAATTATTTATCAGTGTAATTTGGAGGCTGGGACTCCAGATATGAAGATATTCCGTGAAATTGTTGTTCCTGGGTTTGAGCGTTCAGAATTCCACGTTGACCAGGTTTTTGTACGTAGCAAGGATGGCACAAATATACCAATGTTCATTGTGGCCCGAAAGAATATTGTGTTGGATGGATCACACCCTTGCTTGCTATATGGGTACGGTGGATTTAACATTAACCTGACGCCATATTTCAGTGTGAGTCGTACAGTACTTGCAAGGCATTTAGGTGCTGTTTTCTGCATAGCTAACATTCGTGGTGGTGGAGAATATGGGGAGGAATGGCACAAAGCAGGTTCTCTTGCAAAGAAGCAGAATTGCTTTGATGACTTCATTTCTTCTGCTGAATATCTTATTTCTGCTGGTTATACCCAGCCCAGTAAATTGTGCATTGAAGGTGGAAGCAATGGAGGGCTTCTTGTTGGAGCTTGTATTAATCAGAGACCCGATCTTTTTGGTTGCGCATTGGCTCATGTTGGTGTAATGGACATGCTGCGATTCCATAAGTTTACAATAGGTCATGCTTGGACTTCTGATTATGGTTGTTCGGACAATGAGGAAGAGTTCAAGTGGCTAATCAAGTATTCCCCACTCCACAATGTCAAGAGGCCTTGGGAGCAGCATCCTGATCGACTTTTGCAGTACCCGTCCACCATGCTGCTAACCGCCGATCACGATGATCGTGTTGTGCCATTGCATTCATTGAAGTTATTGGCGACAATGCAATATATTCTGTGCACGAGTTTGGAGAAAAGCCCTCAAACCAACCCTATAATTGGTCGCATCGAGTGCAAGGCGGGCCATGGAGCCGGCCGTCCTACACAGAAAATGATTGATGAAGCATCGGACCGTTACGCGTTCATGGCGAAGATGTTGGCAGCGACATGGATTGATTAG 2397 44.18 MVSFRCALHYIPLSVSPFFAPRLQPLPLRLLQVSSSSSFSLSAFPSLHPFSSFSSPSRRRMGSLSALLDPLLYPTARRDDSVVEDYHGLQIADPYRWLEDPDADEVKEFVQEQVKLTESVLQKCDTREKLRAKITELFDHPRYEPPFKRGNKYFYYHNTGLQAQSVLYVQDSLDGEPEVLLDPNALSEDGTVSLSNLSVSKDAKYLAYGLSSSGSDWVTIKVMRIDDKKTEPDTLSWVKFSSISWTVDGKGFFYSRYPAPKEVGTLDAGTETNANLYHELYYHFLGSDQSDDVLCWRDQDHPKYLFSASVTDDGKVITPCFMYVLMEIEEGCDPVNKFYYCNISALPNGLEGFKGKNDMLPFTKLIDDFDAQYHAIANDDTLFTFITNKNAPKYKLVRVDLNDPTVWTELLPESEKDVLESACAVNGDQMIVSYLSDVKYVLQIRDLKSGSLLHQLPIDIGSVYGISARREDSLIFIGFTSFLTPGIIYQCNLEAGTPDMKIFREIVVPGFERSEFHVDQVFVRSKDGTNIPMFIVARKNIVLDGSHPCLLYGYGGFNINLTPYFSVSRTVLARHLGAVFCIANIRGGGEYGEEWHKAGSLAKKQNCFDDFISSAEYLISAGYTQPSKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRFHKFTIGHAWTSDYGCSDNEEEFKWLIKYSPLHNVKRPWEQHPDRLLQYPSTMLLTADHDDRVVPLHSLKLLATMQYILCTSLEKSPQTNPIIGRIECKAGHGAGRPTQKMIDEASDRYAFMAKMLAATWID 798
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25099882 25105973 + Lsi04G017880.1 Lsi04g01788 661837

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01788 798 Pfam Prolyl oligopeptidase, N-terminal beta-propeller domain 74 498 IPR023302 GO:0004252
Lsi04g01788 798 Gene3D - 141 507 - -
Lsi04g01788 798 Gene3D alpha/beta hydrolase 82 788 IPR029058 -
Lsi04g01788 798 PANTHER PROLYL ENDOPEPTIDASE 57 798 - -
Lsi04g01788 798 PANTHER PROLYL OLIGOPEPTIDASE-LIKE PROTEIN 57 798 - -
Lsi04g01788 798 SUPERFAMILY alpha/beta-Hydrolases 518 742 IPR029058 -
Lsi04g01788 798 SUPERFAMILY Peptidase/esterase 'gauge' domain 70 497 - -
Lsi04g01788 798 Pfam Prolyl oligopeptidase family 564 793 IPR001375 GO:0006508|GO:0008236
Lsi04g01788 798 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 548 566 IPR002470 GO:0004252|GO:0006508
Lsi04g01788 798 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 633 653 IPR002470 GO:0004252|GO:0006508
Lsi04g01788 798 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 603 622 IPR002470 GO:0004252|GO:0006508
Lsi04g01788 798 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 715 737 IPR002470 GO:0004252|GO:0006508
Lsi04g01788 798 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 575 599 IPR002470 GO:0004252|GO:0006508
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01788 K01322 PREP; prolyl oligopeptidase [EC:3.4.21.26] - csv:101220524 1451.03
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01788 Lsi-Chr4:25099882 Lsi11g00406 Lsi-Chr11:4237294 4.03E-17 dispersed
Lsi09g01280 Lsi-Chr9:20635402 Lsi04g01788 Lsi-Chr4:25099882 4.20E-06 dispersed
Lsi04g01788 Lsi-Chr4:25099882 Lsi04g00346 Lsi-Chr4:3440883 2.92E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g141 Blo01g01617 Blo12g00866 . Bda03g00306 Bpe02g00328 Bpe04g00268 Bma04g00270 Bma01g02391 . . Cma01g01994 Cma09g00073 Car01g01566 . . Cpe06g00040 . . . . . . . . . . . . . . . . . . Cone20ag0048 Lsi04g01788 Csa04g02679 . . . . Bda11g00953 . . . . . Sed13g2170 Cmo01g02056 Cmo09g00074 . . . Car09g00064 . Cpe02g00051 Bhi09g02937 Tan01g5069 Cmetu07g0799 . Hepe01g2316 Mch11g0077 . Cla05g01584 Cam05g1692 Cec05g1695 Cco05g1742 Clacu05g1681 Cmu05g1572 Cre05g1689 . . Chy07g00370 Cme07g00079
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005910 1 1 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01788 Lsi_Chr04 FPKM 5.108484 6.400826 8.309591 9.165535 10.502647 7.849882 9.678692 10.537507 9.795406 9.890609