Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01792 ATGGCGGAATACGGCGGCGAGAATCTGGAAGTAGATCCAAGAAGCGGCTTCTGCAAATCCACTAAAATCTTCCACAGCAAACGCCGCCCAATCCCACTTCCCCCTAACCAATCCCTCGATGCGACGACGTTTATCTCTTCCCGCCCCCACAACGGCAAAATCGCCCTCATCGACGCCACCACCGGCCAACACATCACCTATTCCCATCTCTGGAACTCCGTCGACGCCGTAGCCTCTTCCCTTTCCGACATGGGCATCAGAAAAGGCCACGTCATCCTCCTCCTTTCCCCAAACTCAATTTACTTCCCCATTATTTGCCTCGCCGTCATGTCCATCGGCGCCGTCATCACCACCACAAATCCCCTCAACACCCCTCAAGAAATCGCCAAACAAATCGCCGATTCCAACCCGATTTTAGCCTTCACTACCCAACAACTAATCCCCAAAATCGCCAGTTCCAAATTGCCAATCGTCATAATCGACGGTCAAATTCCAAAATCCCCAGTCAAAATCGTGTCGACATTGAGCGAAATGATGAGGAAAAAACCAAGTGGGAGTCGAATTAAAGAACGCGTGGAGCAAAACGACACAGCGACTCTGCTTTATTCCTCTGGAACGACAGGGGCGAGCAAAGGCGTAGTGTCGTCTCACAAGAATCTAATTTCAATGGTTCAAGTGGTTGTGACGAGGTTCAAATTAAGCGAAGGAGAAGGGACTTTTATTTGTACGGTCCCGATGTTTCATATTTACGGCCTTGTGGCTTTCGCTACGGGACTGCTCTCTTCGGGATCTACAATCGTTGTATTATCCAAATTTGAGATTCATGAAATGTTGTCGGCGATTGAGAAGTACAAGGCCACGTATCTGCCTCTTGTGCCGCCGATTTTGGTGGCGCTCGTGAACGCCGCCGAGCAGATAAAAGGCAAGTACGATTTAGGGTCGTTGCACACGGCGTTGTCCGGCGGAGCGCCGCTTGGTAAGGAGGTGATTGAGGGTTTTGTTGAGAAGTATCCAAATGTTGCAATTCTTCAGGGTTACGGATTGACGGAGTCCACCGGAATTGGGGCGTCCACCGATTCCTTGGAGGAGAGCCGCCGGTACGGCACGGCGGGGCTTCTGTCACCGAGCACTGAAGGCATGATTGTTGACCCGGAAACCGGTGAGGCTCTTCCCGTGAACCGGACCGGAGAGCTTTGGCTTAGAGGGCCCACCATAATGAAAGGGTACTTTGGTAATGTGGAGGCCACAACCTCGACACTTGATTCAAAGGGTTGGCTGAGAACCGGTGATCTGTGTTATATTGATGAAGATGGTTTTATTTTCGTGGTTGATAGGCTTAAGGAACTCATCAAGTATAAGGGTTATCAGGTGCCTCCTGCGGAATTAGAGGCGTTGTTGCTTACTCATCCTAGTATCTCTGACGTAGCTGTGATTCCATATCCAGACAAAGAGGTTGGACAGTATCCAATGGCTTATGTGGTAAGAAAGGGTGGAAGTGACATTTCACATGAAGATGTAATGCAATTTGTGGCAAAACAGGTCAGTGGCGCCGTACAAGAGAATCCGGCGGGTGGCGTTCGTGGATTTCATTCCAAAGAATCCGTCCGCTCCGGGTCCGTTCTTCATTTTCCGTTCTTTAGAGATAAAGGCCATTCGCCGTCGGGAAGGTCTAGATCTTTCTGGAAGCCATTTTCATATAACACCTCCGCTGTTCTGCCCCACCCCTTCATCGCCTTCGGAAAACTGCGGTCTTGTGATTGGATTGAATCGAACTCCGACTACAAAAGATTTCGCCGGTGCTCTATTGTGATTCTCGACGACATTCATTTCCATCGGTGCCGGTTCTTGTTTCCGTTGCTTGTACTATTTTCTCGTCTGAAGAGGCAACCAACTCAGCAACATGCAGCATCCGAGACTAGCTCTGGCGACAGACCTGCAAATGTACCTTCATCAACCGGTAACGAAGGTGGAGTTGGTGCCCCTCGAAATCGTGTTGGACAAATTGCACATAGCGTGGTTTTAGGAACATTTAATGTTGGGGATCAAGGTGAAGGCGTTGTTCCTGATCTTTCTCGGGTTATTGGGGCAGTTCTGAATTCTATTGGACTAAGCAGCCAAAATACAAACATCCCAGCTGGTATGCAGTCTACATTGCCTAACAATCGTGGCACAGCAAGTCAAGGAAATGAAACATTTAGAGCTAATAATGGGGTTGGAGGACAAGCAACGGGTCAGGCTCAAACTGGACAGGCATTTCCCAGCCAGCCATCACAAAGTTTTCCTCACGTGATTCAAATTCCACTTGCCAGTGCATCCGTATCAGTTCCTTCCATTCATGCGCCCATTCCTGATTCTATAACAACACTTTCCGAGTTCATGAACCGTATGGAGTTTGCAATATCTCAGAATAGTGGAGATCTAACCAGGGTGGAACTGCCTACCAATCCTCAAGGTTTGCCAACCACTGAATCTTTGAGCATTGTCTTGCGTCATGCTCAACGGCTTCTAAGTGATTATGCCATATCTTCACTATCCCATCTTGCTGAGCGTTTGGAGCAAGATAGCTCTTCCACTGATCCCACTGTGAGGGGTCAAATTCAGGAAGAGTCGGTACAAGTAGGACTTAGGACGCAACAATTTGGGGCGCTTCTTCTGGAACTGGGCCGTACAATCTTGACACTCCGTATGGGACAGTCATCTGCTGAGTCAGTTATTAATGCTGGCCCCGCAGTGTATATCTCCCCCATGGGGCCAAATCCCTTAATGGTTCAGCCGTTCCCACTTCAAACTAATTCCCTCCTGGGTGGTGCTGTACTACCATCAAACCCAGTTGCTGTTGGTGCAGTTGGTATTGGAACTGCCCCTAGGCACATCAACATTCACATACATGCTGTTGGTACCAGGTCAAATAATGGGGAGGGAATACCTGCAGAGCATCAGAATGTGGTCAGTGGATCTACGGATTCAGGTGTAGCACAGGCACCTCCTGTCGTCAACATTCCACATCCGCTGGGCGTCTCGATTTCTGCTGCTGTGCAACCTGGTGAAGGTGTTTCTTTTTCCCAGCCTTCTCCCGACTCTGTTTCATTATCCTCCATTATTGCTGATGTCAATTCACGAATTAGAGATTTAGTTGGTAATGTTGAAGGTGGTAGCACTACTGAATCAGGTCAAATGCAAACGGCAGCTCAGAATCCTTCTAGTGGCTCTGGACAAGGGAGTGAACAGCACAGTGATACGAAAAGGGACACAGGTGGAGAGTCGAGTGAGTCAATATCTGGAAGCAACCCAGAAACTGGAAGTGACAAGACTGTAAACACAGACAATATTTGTCGAGATACAGGAAGGGCTGTAAACCCACCTGATTTACCAACATGCTCTGGTGGTAGAGGCTCTGAATTTATTGGAAGAAATGAAGAAAATTTTCAAAGTCGGGCATCTTGTGAGAAGAGCACGGGAACGGGGTCTTCTCAAACTGTTCCACTTGGACTTGGACTAGGGGGTCTGGAACGACCGAGGCGAGGTAGGCAGCAAAGTTCACAGGCTAAGGAGGGTAGCAGTGGAACCAGCCACAGCAAGGATCCTACAGGCCAGCAGTTTTTACAATCTCTTGCCTCCAGTGCTTCTTCTAGGAATAGGTCAAATGCTCATGAACCCTCCTCAGGCCTACATTCGACTGCTAGCCCAACTGTGGAGGGCAGATCCTTGCATGGGCCTGGTTCTGACAGCCAAATTGATCTGGGAAGCAGTATGTCTCAAGTTTTGCAGAGTCCTGCTTTGAGTGGCCTATTGACGGGGCTTTCAGAGCAAGCTGGCGTTGGTTCTCCTGATGTCTTGAGGAACATGTTGCAACAGCTCACGCAAAGCCCTCAGATGAGAAACACAGTCAATCAAATTGCTCAACAGGTTGACCCTCAAGATATTGAGCACATGTTTGCTGGGTCAGGAAGAGGCCAAGGCGGTGGTATCGATTTGTCCAGGATGTTCCAACAGATGATGCCTATCGTCTCTCAAGTGCTTGGAGGAGGGCCAATGCAACCATCTTCTTCTAACATGGACCGAGAGCCAAGGCAACCACCTTCGTCAAACCTGGATAGAGAGCCAACGCCTCATAGCGAGAGGTCTGGTAGTGGAGTGGAAACTTCTAATGGCCCAAATTTTCAGATTGACTCCCAAGATCTTGCTCGAAGGATCACATCTACCAATTCGCCAAGGGATGTCTTCCGCGCTGTAGTTGAGAGCTCAGCCCGACTTTCTGGCAGTAGTAGCGAAGATATCGCAAATGAGTTGTGCAGCAATGAGAGACTTGCTAAGGAATATGTAGAGATGTTATCCAGTGATGTAAACCGACGGTTACAAGGCAATTCAGATCAGGAAAAGTAA 4383 48.83 MAEYGGENLEVDPRSGFCKSTKIFHSKRRPIPLPPNQSLDATTFISSRPHNGKIALIDATTGQHITYSHLWNSVDAVASSLSDMGIRKGHVILLLSPNSIYFPIICLAVMSIGAVITTTNPLNTPQEIAKQIADSNPILAFTTQQLIPKIASSKLPIVIIDGQIPKSPVKIVSTLSEMMRKKPSGSRIKERVEQNDTATLLYSSGTTGASKGVVSSHKNLISMVQVVVTRFKLSEGEGTFICTVPMFHIYGLVAFATGLLSSGSTIVVLSKFEIHEMLSAIEKYKATYLPLVPPILVALVNAAEQIKGKYDLGSLHTALSGGAPLGKEVIEGFVEKYPNVAILQGYGLTESTGIGASTDSLEESRRYGTAGLLSPSTEGMIVDPETGEALPVNRTGELWLRGPTIMKGYFGNVEATTSTLDSKGWLRTGDLCYIDEDGFIFVVDRLKELIKYKGYQVPPAELEALLLTHPSISDVAVIPYPDKEVGQYPMAYVVRKGGSDISHEDVMQFVAKQVSGAVQENPAGGVRGFHSKESVRSGSVLHFPFFRDKGHSPSGRSRSFWKPFSYNTSAVLPHPFIAFGKLRSCDWIESNSDYKRFRRCSIVILDDIHFHRCRFLFPLLVLFSRLKRQPTQQHAASETSSGDRPANVPSSTGNEGGVGAPRNRVGQIAHSVVLGTFNVGDQGEGVVPDLSRVIGAVLNSIGLSSQNTNIPAGMQSTLPNNRGTASQGNETFRANNGVGGQATGQAQTGQAFPSQPSQSFPHVIQIPLASASVSVPSIHAPIPDSITTLSEFMNRMEFAISQNSGDLTRVELPTNPQGLPTTESLSIVLRHAQRLLSDYAISSLSHLAERLEQDSSSTDPTVRGQIQEESVQVGLRTQQFGALLLELGRTILTLRMGQSSAESVINAGPAVYISPMGPNPLMVQPFPLQTNSLLGGAVLPSNPVAVGAVGIGTAPRHINIHIHAVGTRSNNGEGIPAEHQNVVSGSTDSGVAQAPPVVNIPHPLGVSISAAVQPGEGVSFSQPSPDSVSLSSIIADVNSRIRDLVGNVEGGSTTESGQMQTAAQNPSSGSGQGSEQHSDTKRDTGGESSESISGSNPETGSDKTVNTDNICRDTGRAVNPPDLPTCSGGRGSEFIGRNEENFQSRASCEKSTGTGSSQTVPLGLGLGGLERPRRGRQQSSQAKEGSSGTSHSKDPTGQQFLQSLASSASSRNRSNAHEPSSGLHSTASPTVEGRSLHGPGSDSQIDLGSSMSQVLQSPALSGLLTGLSEQAGVGSPDVLRNMLQQLTQSPQMRNTVNQIAQQVDPQDIEHMFAGSGRGQGGGIDLSRMFQQMMPIVSQVLGGGPMQPSSSNMDREPRQPPSSNLDREPTPHSERSGSGVETSNGPNFQIDSQDLARRITSTNSPRDVFRAVVESSARLSGSSSEDIANELCSNERLAKEYVEMLSSDVNRRLQGNSDQEK 1460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25135071 25151668 - Lsi04G017920.1 Lsi04g01792 661841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01792 1460 Gene3D - 21 447 IPR042099 -
Lsi04g01792 1460 MobiDBLite consensus disorder prediction 1049 1075 - -
Lsi04g01792 1460 SUPERFAMILY Acetyl-CoA synthetase-like 47 516 - -
Lsi04g01792 1460 MobiDBLite consensus disorder prediction 721 757 - -
Lsi04g01792 1460 MobiDBLite consensus disorder prediction 1374 1391 - -
Lsi04g01792 1460 MobiDBLite consensus disorder prediction 1339 1391 - -
Lsi04g01792 1460 MobiDBLite consensus disorder prediction 1342 1366 - -
Lsi04g01792 1460 Gene3D - 448 526 IPR045851 -
Lsi04g01792 1460 MobiDBLite consensus disorder prediction 1137 1161 - -
Lsi04g01792 1460 PANTHER OS07G0498800 PROTEIN 627 1459 - -
Lsi04g01792 1460 MobiDBLite consensus disorder prediction 632 657 - -
Lsi04g01792 1460 MobiDBLite consensus disorder prediction 632 662 - -
Lsi04g01792 1460 MobiDBLite consensus disorder prediction 1087 1113 - -
Lsi04g01792 1460 MobiDBLite consensus disorder prediction 1179 1232 - -
Lsi04g01792 1460 Pfam AMP-binding enzyme C-terminal domain 461 514 IPR025110 -
Lsi04g01792 1460 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 627 1459 - -
Lsi04g01792 1460 ProSitePatterns Putative AMP-binding domain signature. 200 211 IPR020845 -
Lsi04g01792 1460 MobiDBLite consensus disorder prediction 1047 1247 - -
Lsi04g01792 1460 CDD 4CL 33 524 - -
Lsi04g01792 1460 Pfam AMP-binding enzyme 50 452 IPR000873 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00484 Lsi-Chr2:4044869 Lsi04g01792 Lsi-Chr4:25135071 1.78E-94 dispersed
Lsi03g02006 Lsi-Chr3:31429769 Lsi04g01792 Lsi-Chr4:25135071 1.38E-121 dispersed
Lsi04g00112 Lsi-Chr4:1223900 Lsi04g01792 Lsi-Chr4:25135071 5.50E-102 dispersed
Lsi04g01792 Lsi-Chr4:25135071 Lsi06g01133 Lsi-Chr6:21580207 3.36E-98 dispersed
Lsi11g00390 Lsi-Chr11:4021808 Lsi04g01792 Lsi-Chr4:25135071 4.13E-33 dispersed
Lsi04g01791 Lsi-Chr4:25125401 Lsi04g01792 Lsi-Chr4:25135071 6.92E-06 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01792 K10526 - csv:101216180 1363.98