Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01798 AAAAAAAAAAAAAAAGATGAGGATTCTTCAGGCTATGCTGGAGCCGTAGCGGTAGCACTGAGAGATCCATTTTTGTTTCATCTTTTTCCTTTTTTTCCCTGTTCTTGTTCAGACCAATTTTCTTCTCCCCAATCAGAGTGGAGGAGTAATACAGAGAGAGAGAGAGAGAGACAGGAGCTTCGGTGGTCACTGTCACCAGGAGCTATGGCTTTTCAGCGGCGGCGCAACCACTATTATCATCGTTTTAGATTCTTGATCCCATTCATTTCGGCCATTTTTGGTGGTCTGCTTCTATTCTTCGCACTTCTCTCTTTTCTCGCTCCTTCTCCTAATGATTCCGATCATCACCGCCGCATTCCTCCGGTTCAGTTCAATGCTGCTTCCGACGTGGCGATTGGAGTTTCGCATTTTCGCGTTCCGCGGAATGGAGCGAGATCCGGTCGTGATCTTTGGACTTCCAGAAATGCGAAGTTCTACTCTGGATGTAGTAATGCTAGCAACAAGTTTCAGAAAGCTAATGCTATTACGCGTTCGAATCGTTACTTGCTGATTGCAACTAGTGGAGGTTTAAATCAACAAAGAACTGGGATAACAGATGCAGTTGTTGCAGCACGTATATTAAATGCTACACTTGTTATCCCTAAGCTTGATCAGAAGTCCTTTTGGAGGGATTCTAGCAACTTCTCAGAGATCTTCGATGTTGATTGGTTTGTATCATTCCTGTCAAAAGATGTGAAAATCATTCATCAGCTACCAAAGAGGGGTGGGAAAACATGGAATACACACTCAATGCGTGTCCCCAGGAAGTGTAGTGAAAGATGTTATCAGAACCGTGTATTACCTGTTCTCTTGAAAAGGCATGCTATTCAGCTGTCCAAGTTTGATTATAGACTAGCAAACAAGTTGGAGACAGATTTACAGAAACTGAGATGTAGAGTTAACTACCATGCTTTGAAATTCACTGACCCAATACAGAAAATGGGCGAAAAGCTGGTCCATCGAATGCGGGCAAGTAGCAATCATTACATTGCTTTGCACCTCAGGTTTGAACCAGATATGCTAGCGTTCTCAGGTTGCTATTATGGTGGAGGTGAAAAAGAAAGGAGAGAACTTGGAGCTATCCGAAGACGATGGAAAACATTACATCAAGTAAGCAATCCTGATAAAGAAAGGAGGCATGGAAAATGTCCACTGACTCCAGAAGAGGTTGGTTTGATGCTGAGAGCACTCGGATATGGGCAGGATGTTCATATCTATGTGGCATCTGGAGAAGTATATGGAGGGGAAGAGACACTAGCCCCTTTGAAAGCCCTTTTTCCTAATTTCCATTCGAAAGAGACCATAGCTTCCAAGGCGGAATTAGACAAATTTTCTTCATATTCTTCTCGAATGGCTGCACTTGATTTCATTGTCTGCGATGAGAGTGATGTATTTGTCACCAACAATAATGGCAATATGGCAAGAATATTGGCTGGAAGAAGAAGATACTTCGGACACAAGCCTACCATTCGTCCAAATGCCAAGAAACTATATAGGTTGTTCTTGAACAGAGCCAACATGACATGGGGAGCATTTTCCTCCAGGGTTAGAACTTATCAGAGAGGCTTCATGGGGGAGCCAAATGAGGTGAGGCCAGGCAGGGGTGAATTTCATGAAAACCCATCGCCTTGTATATGTGAAGATGCCAAGCCTCATGTAAAGTCTGATTCAGGACCCAGAAAATATGGTAAGAGTGATATCACCCCAAGGAGAGATGAGCCTGCAACAGTAGACGACCAAAACAACGATTATGAGCCAGAATGGCCCGACTCGGAGGAAGAAGAAGACCAAGTTGACTTTCAAGATAAAGGTCCATTGAACGCAACGAGTTTGGACTATGATGCAATTAACTCTGAGGAGCCTGAATTGGAAGAGATGCTCTCAGACTAA 1929 43.55 KKKKKDEDSSGYAGAVAVALRDPFLFHLFPFFPCSCSDQFSSPQSEWRSNTERERERQELRWSLSPGAMAFQRRRNHYYHRFRFLIPFISAIFGGLLLFFALLSFLAPSPNDSDHHRRIPPVQFNAASDVAIGVSHFRVPRNGARSGRDLWTSRNAKFYSGCSNASNKFQKANAITRSNRYLLIATSGGLNQQRTGITDAVVAARILNATLVIPKLDQKSFWRDSSNFSEIFDVDWFVSFLSKDVKIIHQLPKRGGKTWNTHSMRVPRKCSERCYQNRVLPVLLKRHAIQLSKFDYRLANKLETDLQKLRCRVNYHALKFTDPIQKMGEKLVHRMRASSNHYIALHLRFEPDMLAFSGCYYGGGEKERRELGAIRRRWKTLHQVSNPDKERRHGKCPLTPEEVGLMLRALGYGQDVHIYVASGEVYGGEETLAPLKALFPNFHSKETIASKAELDKFSSYSSRMAALDFIVCDESDVFVTNNNGNMARILAGRRRYFGHKPTIRPNAKKLYRLFLNRANMTWGAFSSRVRTYQRGFMGEPNEVRPGRGEFHENPSPCICEDAKPHVKSDSGPRKYGKSDITPRRDEPATVDDQNNDYEPEWPDSEEEEDQVDFQDKGPLNATSLDYDAINSEEPELEEMLSD 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25205185 25210385 - Lsi04G017980.1 Lsi04g01798 661847

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01798 642 Pfam GDP-fucose protein O-fucosyltransferase 181 496 IPR019378 -
Lsi04g01798 642 CDD O-FucT_plant 181 502 IPR024709 -
Lsi04g01798 642 MobiDBLite consensus disorder prediction 592 612 - -
Lsi04g01798 642 MobiDBLite consensus disorder prediction 544 591 - -
Lsi04g01798 642 PANTHER O-FUCOSYLTRANSFERASE 16 73 642 - -
Lsi04g01798 642 MobiDBLite consensus disorder prediction 538 642 - -
Lsi04g01798 642 PANTHER O-FUCOSYLTRANSFERASE 16 73 642 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01798 - - - csv:101222011 1120.53
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00488 Lsi-Chr2:4130925 Lsi04g01798 Lsi-Chr4:25205185 1.95E-67 dispersed
Lsi04g01798 Lsi-Chr4:25205185 Lsi10g00844 Lsi-Chr10:12219089 0 dispersed
Lsi07g00966 Lsi-Chr7:12526308 Lsi04g01798 Lsi-Chr4:25205185 1.62E-48 dispersed
Lsi04g01798 Lsi-Chr4:25205185 Lsi08g00985 Lsi-Chr8:18296828 3.23E-94 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g116 Blo01g01624 Blo12g00860 . Bda03g00313 Bpe02g00318 Bpe04g00274 Bma04g00281 Bma01g02399 . . Cma01g02008 Cma09g00062 Car01g01577 . . Cpe06g00029 . . . . . . . . . . . . . . . Cone4ag2012 Cone7ag1927 . Cone20ag0032 Lsi04g01798 Csa04g02692 . . . . Bda11g00961 . . . . . . Cmo01g02066 Cmo09g00063 . . . Car09g00054 . Cpe02g00041 Bhi09g02913 . . . . . . Cla11g01817 Cam11g1883 Cec11g1906 Cco11g1915 Clacu11g2047 Cmu11g1852 Cre11g2257 . . Chy07g00383 Cme07g00064
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000949 2 15 2 3 3 1 3 2 1 2 1 2 3 2 2 3 1 5 3 2 2 2 2 2 2 2 1 5 3 2 81
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01798 Lsi_Chr04 FPKM 29.755905 37.298042 30.272358 28.980232 34.357452 29.486658 31.92609 12.645615 13.87413 13.900449