Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01803 ATGGATAAGAAGGAGAAAAATTCCCTCACCGTTGCTCCTTTCGAGTGTGCTTGGCTCAAGGATTTAAGATTTCGGGAAGCAGGACGGGGTTGTGTGGCTTTTGAAGCTTCTGCTCATAATGATGTCACGTTGGTGTTCCGAGAGAATGTGGGGAGTCAACATTACCATTACAAACGAGATATCAGTCCTCATTATACGGTTATAATAGGTAGTCACCGAAATCGACGTTTAAGGATTATAGCCGATGGGAGAACTGTTGTTGATGTAGAGGGTGTTGCTCTTTGCAGTTCCTCGGCGTTTCAGAGCTATTGGATCAGTGTCTATGATGGTTTGATCAGCATTGGGAAGGGGAGATACCCTTTTCAGAATCTGGTCTTTCAATGGCTTGATACAAATCCGAACTGCAGCGTTCGATATATTGGGCTTAGTAGCTGGGATAAACATGTGGGATATAGAAATGTTAACGTTTTGCCGCTGACGCAGGACCATATTTCCTTGTGGAAGCATGTGGATAATGGTGATGAAGGCGAGGAAGATGTGGAATTGGAGTTAGAAGATGAATACACAGATTACAAGAACTGGGGCCTCGAACATTTTCTAGAAAATTGGGATTTGTCGGATGTACTTTTCTGTGTAGATTCTGGAGAAACACTTGTACCTGCTCACAAGGCTATCTTATTTGCTTCGGGAAACTTTCCCTTGAATTTGTCACAAGATGTTGTGCAGCTACATGGAGTATCATATCCAGTTCTCCATGCTCTTCTTCAATATATTTACACAGGTCAAACTGAGGTTCTAGACTCTCAACTTGGTTCCTTGAGGGATTTAGCCTTACAACTTGAAGTGATCGCGTTAGTTAACCAGTGTGATGACATGATGGAACAATTAAAACTGAACAAAAAGTTGTTGGACTCGGGCAAGAGGGTGGAATTATCATATCCAAGGATTCAGCCCCATTGTACTACAGTATTCCCCTCCGGGCTTCCATTAAACGTGCAGAGGCTCAAACAATTACAATGTACTGGCAAGTTCAGTGATGTATGCATCTATATACAAGGTCATGGGTTTGTTGCCCATGTGCACAAAATCATTCTTAGCTTATGGAGCATGCCATTTGAAAGGGTGAGCAATTGGTACTGCATCTCATCTAATGTAATTACGATGTTTACCAATGGAATGAGTGAAACAGCATCCTCTGAGGTTTATATTAGGGATGTATCACCAGAAGCTTTTCAAACCATGCTCAAGTTCATGTATAGTGGAGAATTGAGTAAAGATGTTACAATGGAATCTGATGTCTTGTTACTTCAACTACTATTTTTAGCTGACCAATTTGGTGTCTCTCTTCTTCATCAAGAATGCTGCAAAATACTTCTAGAATGCCTTTCGGAGGTAGTGTGGATTCAGTATGTTCCATCCTTCAAGTTGTTTCATCAATTCCATGCTGTAAGCTCATTGAAGAAACTTGTGAAGTGGTTCTTGCAGTGTCCTGATTTGACAGTGACGTCTGAGGAAAAAGTACTCAATGCAATCTTAATGTGGGGTTTAGAAGCAAGTGAATTATGTGGGTGGATGGCGGTAGATGAGCTTATGACATTTTCAACCCCTGAAATCCTTTTTGGTGAGAGACTCCAATCAGTTCAGGATTTGCTTTCTCTCGTGCGATTTCCATTACTCCCATATGCCTTGTTGGAGAAGTTGGAGAACAGCAGCATTAGCAGGAAGATTTGTACCTTTAAAAATCTTGTGAAGGAGGCTATCGACTTTGTGCAACTTGAACCATCAAAGCTAGAGGACAAGAAGAAGAACAATGTCAGATTTCAACATAGACGGTCTAGTTATAAGGAGCTACAGTACATTTGTGATGGAGACAGCAACGGAGTTCTATTCTTTGCCGGTACATCATATGGAGAGCACCAGTGGGTTAATCCCATTCTCTCAAAGAAAATCACTATAACGGCAAGCAGTCCACCTTCAAGATACACAGATCCAAAGGTTCTGGTATCGAGAACTTACCAGGGAACTTCCTTTGCCGGGCTTCGCCTGGAAGACGGGAAAACTTATTCATGGTGGATGGTTGATATTGGCGAAGATCATCAGCTGATGTGCAATTACTACACATTAAGACAAGATGGGTCAAGAGCATTCATCAGATACTGGACTCTCCAGGGGTCATTCGATGGGAAAACTTGGACAAACTTGCGAGTACATGAGAACGATCAGACGGTATGCAAGCCTGGTCAGTTTGCATCATGGCCAGTAACTGGACCGAACGCTTTACTTCCATTTAGATTCTTCCGTGTTCTTCTCACAGCTCCAACAACTGATGCTTCAAATCCATGGAACTTGTGCATTTGCTTTCTGGAACTGTATGGCTACTTCCTCTAG 2388 42.25 MDKKEKNSLTVAPFECAWLKDLRFREAGRGCVAFEASAHNDVTLVFRENVGSQHYHYKRDISPHYTVIIGSHRNRRLRIIADGRTVVDVEGVALCSSSAFQSYWISVYDGLISIGKGRYPFQNLVFQWLDTNPNCSVRYIGLSSWDKHVGYRNVNVLPLTQDHISLWKHVDNGDEGEEDVELELEDEYTDYKNWGLEHFLENWDLSDVLFCVDSGETLVPAHKAILFASGNFPLNLSQDVVQLHGVSYPVLHALLQYIYTGQTEVLDSQLGSLRDLALQLEVIALVNQCDDMMEQLKLNKKLLDSGKRVELSYPRIQPHCTTVFPSGLPLNVQRLKQLQCTGKFSDVCIYIQGHGFVAHVHKIILSLWSMPFERVSNWYCISSNVITMFTNGMSETASSEVYIRDVSPEAFQTMLKFMYSGELSKDVTMESDVLLLQLLFLADQFGVSLLHQECCKILLECLSEVVWIQYVPSFKLFHQFHAVSSLKKLVKWFLQCPDLTVTSEEKVLNAILMWGLEASELCGWMAVDELMTFSTPEILFGERLQSVQDLLSLVRFPLLPYALLEKLENSSISRKICTFKNLVKEAIDFVQLEPSKLEDKKKNNVRFQHRRSSYKELQYICDGDSNGVLFFAGTSYGEHQWVNPILSKKITITASSPPSRYTDPKVLVSRTYQGTSFAGLRLEDGKTYSWWMVDIGEDHQLMCNYYTLRQDGSRAFIRYWTLQGSFDGKTWTNLRVHENDQTVCKPGQFASWPVTGPNALLPFRFFRVLLTAPTTDASNPWNLCICFLELYGYFL 795
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25236088 25243045 - Lsi04G018030.1 Lsi04g01803 661852

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01803 795 Gene3D Potassium Channel Kv1.1; Chain A 194 310 IPR011333 -
Lsi04g01803 795 Gene3D Potassium Channel Kv1.1; Chain A 329 464 IPR011333 -
Lsi04g01803 795 SUPERFAMILY POZ domain 195 293 IPR011333 -
Lsi04g01803 795 CDD BTB_POZ_ZBTB_KLHL-like 344 433 - -
Lsi04g01803 795 SUPERFAMILY POZ domain 331 459 IPR011333 -
Lsi04g01803 795 Gene3D - 646 793 - -
Lsi04g01803 795 ProSiteProfiles BTB domain profile. 206 267 IPR000210 GO:0005515
Lsi04g01803 795 SMART BTB_4 345 462 IPR000210 GO:0005515
Lsi04g01803 795 SMART BTB_4 206 297 IPR000210 GO:0005515
Lsi04g01803 795 PANTHER OS05G0345500 PROTEIN 2 794 - -
Lsi04g01803 795 Pfam BTB/POZ domain 197 295 IPR000210 GO:0005515
Lsi04g01803 795 Pfam BTB/POZ domain 335 460 IPR000210 GO:0005515
Lsi04g01803 795 Gene3D - 478 590 - -
Lsi04g01803 795 Pfam Farnesoic acid 0-methyl transferase 52 149 IPR022041 -
Lsi04g01803 795 ProSiteProfiles BTB domain profile. 345 427 IPR000210 GO:0005515
Lsi04g01803 795 SUPERFAMILY Galactose-binding domain-like 638 794 IPR008979 -
Lsi04g01803 795 Pfam F5/8 type C domain 652 784 IPR000421 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01803 - - - csv:101222966 1427.15
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g100 Blo01g01634 Blo12g00855 . Bda03g00318 Bpe02g00311 Bpe04g00279 Bma04g00286 . . . . Cma09g00057 . . . Cpe06g00025 . . . . . . . . . . . . . . . Cone4ag2017 Cone7ag1933 . . Lsi04g01803 Csa04g02697 . . . . . . . . . . Sed01g2438 . Cmo09g00058 . . . Car09g00049 . . Bhi09g02894 Tan01g5102 Cmetu07g0710 . Hepe01g2337 Mch11g0535 . Cla11g01820 Cam11g1886 Cec11g1911 Cco11g1918 Clacu11g2050 Cmu11g1855 Cre11g2260 . . Chy07g00388 Cme07g00059
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008391 1 2 2 1 1 0 1 1 0 1 1 1 1 1 1 1 0 2 1 1 1 1 1 1 1 1 0 1 2 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25226 PF00754 F5_F8_type_C 7.90E-09 CL0202 Lsi TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01803 Lsi_Chr04 FPKM 0.183862 0.0 0.0 0.0 0.233771 0.204448 0.0 0.225704 0.0 0.0