Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01804 ATGGCTGGATCGGATGAGAACAACCCCGGAGTGATCGGACGGGCAAATCTCCACGGGAGTTTACGAATTGGTGGTGGTGGCGGTGGCAAATTTGTGGTGGGGATGGGTCAAAACCGCAGAGCTTTGAGCAGCATTAATGGAAATGTTGCAGCAGCTCCTCCTGCCCCTCATCCCTGTGCAGTCCTCAAAAGAGGCTTAACAGAAACTGATGTTGTCCTCAACAATAAAGACCAGCCGATTCCAATTCATCGACCTATCACTCGGAAGTTTGCAGCTCAGCTGGCCAATAAGCAGCAGCCACCTGTGTCTAAGGTTGATAAAAAGCCACTTGAATCTGCTCCAACTCACAAAGAATCGTCAGATCATCATCCCATCATAGAGGAAGATGATTCCATGGGTGAATCAACAGTTCCAATGTTTGTTCAACACACAGAAGCAATGTTGGACGAAATTGACAGAATGGAGGAGGTGGAAATGGAAGATATAGAAGAAGAGCCAGTAATTGATATAGACAGCCGTGATAAGAAGGATCAACTAGCTGTTGTGGAGTACATTGATGACTTGTATGCTTTCTACAGGAAATCCGAGGTACACTACAAGTTTGAGCTGATGGAAGAGACATTGTACTTAACAGTCAACCTGATTGATAGATTCTTAGCTGTTCACTCAGTAGTGAGAAAGAAGCTTCAGCTTGTTGGAGTGACGGCCATGCTTATTGCTTGCAAGTATGAAGAGGTTTCTGTTCCAGTTGTTGACGATCTTATTCTAATATCTGACAAAGCCTACACCCGAAAAGAAGTTCTAGACATGGAGAAGTTGATGATCAATACCTTACAGTTCAATCTGTCTGTTCCAACACCTTATGTCTTCATGAGAAGGTTTCTCAAAGCTGCACAATCTGATAGAGAGCTGGATTTGCTCTCCTTCTTCATGGTGGAACTCTGTCTAGTGGAGTATGAAATGCTGAAGTATAGACCTTCATTAATGGCTGCTGCTGCAGTGTTCACTGCTCAATGCACCGTGAATGGCTTCAAAGAATGGAGCAAAACCAGTGAATGGCACACTGGCTATTCACAAGAACAACTTCTGGAATGTTCAAGGCTGATGGTGGAGTTCCATAAGAAAGCAGGGACAGGGAAATTAACAGGAGTTCATAGGAAGTATTGCACATCCAAGTTTGGATATGCTGCTAGAAGTGAGCCAGCAAGCTTTCTGTTGGAAGAAAGGCAATGA 1233 44.28 MAGSDENNPGVIGRANLHGSLRIGGGGGGKFVVGMGQNRRALSSINGNVAAAPPAPHPCAVLKRGLTETDVVLNNKDQPIPIHRPITRKFAAQLANKQQPPVSKVDKKPLESAPTHKESSDHHPIIEEDDSMGESTVPMFVQHTEAMLDEIDRMEEVEMEDIEEEPVIDIDSRDKKDQLAVVEYIDDLYAFYRKSEVHYKFELMEETLYLTVNLIDRFLAVHSVVRKKLQLVGVTAMLIACKYEEVSVPVVDDLILISDKAYTRKEVLDMEKLMINTLQFNLSVPTPYVFMRRFLKAAQSDRELDLLSFFMVELCLVEYEMLKYRPSLMAAAAVFTAQCTVNGFKEWSKTSEWHTGYSQEQLLECSRLMVEFHKKAGTGKLTGVHRKYCTSKFGYAARSEPASFLLEERQ 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25250289 25253464 - Lsi04G018040.1 Lsi04g01804 661853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01804 410 Gene3D - 181 277 - -
Lsi04g01804 410 SMART cyclin_7 289 371 IPR013763 -
Lsi04g01804 410 SMART cyclin_7 192 276 IPR013763 -
Lsi04g01804 410 MobiDBLite consensus disorder prediction 93 129 - -
Lsi04g01804 410 PANTHER CYCLIN-B2-3-RELATED 27 196 - -
Lsi04g01804 410 PANTHER CYCLINS 196 403 IPR039361 -
Lsi04g01804 410 SUPERFAMILY Cyclin-like 177 282 IPR036915 -
Lsi04g01804 410 SMART Cyclin_C_2 285 402 IPR004367 -
Lsi04g01804 410 Pfam Cyclin, N-terminal domain 196 283 IPR006671 -
Lsi04g01804 410 PANTHER CYCLIN-B2-3-RELATED 196 403 - -
Lsi04g01804 410 MobiDBLite consensus disorder prediction 109 129 - -
Lsi04g01804 410 CDD CYCLIN 283 370 IPR013763 -
Lsi04g01804 410 Gene3D - 278 407 - -
Lsi04g01804 410 SUPERFAMILY Cyclin-like 284 402 IPR036915 -
Lsi04g01804 410 Pfam Cyclin, C-terminal domain 285 399 IPR004367 -
Lsi04g01804 410 PANTHER CYCLINS 27 196 IPR039361 -
Lsi04g01804 410 CDD CYCLIN 196 274 IPR013763 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01804 Lsi-Chr4:25250289 Lsi10g01118 Lsi-Chr10:15432307 1.07E-62 dispersed
Lsi11g01591 Lsi-Chr11:24296969 Lsi04g01804 Lsi-Chr4:25250289 1.82E-64 transposed
Lsi01g00535 Lsi-Chr1:4369805 Lsi04g01804 Lsi-Chr4:25250289 2.24E-145 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01804 K21777 - csv:101223199 711.835