Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01805 ATGGAGGATCACCGACCTTCAAGTGGTTACAACACCCCTTTCTGGACTACGAATTCTGGTGCTCCAGTGTGGAACAACAACTCGTCGTTGACCGTTGGATCCAGGGGTCCTATTCTCCTAGAGGATTATCATCTAGTGGAGAAACTTGCTAACTTTGATAGAGAGCGGATTCCAGAGCGTGTTGTCCATGCTAGAGGAGCTAGTGCCAAAGGGTTTTTTGAGGTGACTCATGATATTGCCAACCTTACTTGTGCCGATTTCCTTCGAGCCCCTGGAGTTCAGACTCCAGTTATTGTACGTTTCTCCACTGTTATCCATGAGCGTGGCAGCCCTGAAACGCTGAGAGATCCCCGAGGTTTTGCTGTGAAGTTTTACACCAGGGAGGGCAATTTTGATCTTGTGGGCAACAACTTCCCTGTATTTTTCATCCGTGATGGTATGAAATTTCCAGACATGGTACATGCTCTCAAACCGAATCCCAAGTCCCACATCCAGGAGAATTGGAGGATCCTTGACTTCTTTTCTCACCATCCTGAAAGTTTGAACATGTTCACATTTCTATTTGATGATATTGGCATCCCACAAGATTACAGGCACATGGATGGTTCAGGTGTCAACACCTATACTCTGATTAACAAGGCAGGGAAAGCACACTATGTGAAATTTCACTGGAGGCCTACCTGTGGAGTCAAGTCCTTGCTGGAGGAAGATGCTATTCGCGTTGGAGGAAGTAATCATAGCCATGCTACTCAGGACCTCTATGATTCAATTGCAGCTGGCAACTACCCTGAGTGGAAGCTTTTCATTCAGACTATTGACCCTGATCATGAAGATAGATATGACTTTGACCCTCTGGACGTAACCAAGACCTGGCCCGAGGATATCTTGCCCTTGCAGCCAGTTGGTCGCATGGTTTTGAATAAGAACATTGATAACTTCTTTGCAGAGAATGAACAGCTGGCCTTTTGTCCTGCCATTATAGTTCCTGGAGTCTACTATTCAGATGACAAATTGCTTCAGACCAGGATCTTCTCCTATTCTGATACTCAGAGGCACCGTCTTGGACCAAACTATCTGCAGCTCCCTGCTAATGCACCCAAGTGTGCTCACCACAACAATCACCACGAGGGTTTCATGAACTTTATGCACCGAGATGAGGAGGTGAATTACTTCCCTTCAAGGTTTGATCCTGCCCGCCACGCAGAGAGGTATCCTCACCCACCCGCTGTCTGCACTGGAAAGCGCGAGAGGTGCGTAATTGACAAGGAGAACAACTTTAAGGAGCCTGGAGAGAGATACAGATCTTGGACATCAGACAGGCAAGAACGATTCATCCGCAGATGGGTGGATGCTTTGTCAGACACCCGTGTCACCCATGAGATCCGCAGCATCTGGATTTCTTACTGGTCTCAGGCGGACAGGTCTGTTGGTCAGAAGCTTGCATCTCATCTCAACATTTGGAAATTACGGTATGAGTTTGTTTACGTCAAGTTTTATGTACTAGCTTTGGGGTTTGTGGAGTCATTTGGCAACCCCTCCTCCTCCGCCATATTAAACAAAAAACTGAGAAAAGATGGGGATGCCATTAATAAAGCGCAAGCCACGGTTTCTCCAGCTCGTCTTCAACTCTCTGGTTCATCTCTAATCTCCTCCTTCAATGGATCCTTACAAGTTTTCGAATTTCTTCAACGACCTTCAAGTGGTTACAACACTCCCTTCTGGACTACCAATTCTGGTGCTCCAGTGTGGAACAATAACTCCGCCTTGACCATTGGATCCAGAGGACCTATTCTCCTAGAGGATTATCATCTTGTGGAGAAACTTGCTAACTTTGATAGAGAGCGGATCCCAGAGCGTGTTGTTCATGCTAGAGGAGCTAGTGCAAAAGGGTTTTTTGAGGTGACTCGTGATATCACCCACCTTACTTGTGCTGATTTTCTTCGAGCCCCTGGAGTTCAAACTCCAGTTATTGGTAATTTTGATCTTGTGGGCAACAACTTTCCTGTATTTTTCGTCCGTGATGGTATGAAATTTCCAGACATGGTACATGCTCTCAAACCGAATCCCAAGTCCCAAATCCAGGAGAATTGGAGGATCCTTGACTTCTTTTCTCACCATCCTGAAAGCCTGCATATGTTCACATTTCTATTTGATGATCTTGGCATCCCACAAGATTACAGGCACATGGACGGTTCAGGTGTTAACACTTATACTCTGATTAACAAGGCAGGGAAAGCACATTATGTGAAATTTCATTGGAGGCCTACCTGTGGAGTCAAGTCTTTGTTGGATGAAGAAGCTATCCGCGTTGGAGGAAGTAATCATAGCCATGCTACTCAGGACCTCTATGATTCAATTGCAGCTGGCAACTACCCTGAGTGGAAGCTTTTCATTCAGACTATTGACCCTGATCATGAAGATAAATATGACTTTGACCCTCTAGATGTAACCAAGACTTGGCCTGAGGATATCTTGCCCTTGCAGCCAGTTGGTCGCTTGGTTTTGAATAAGAACATCGATAACTTCTTTGCAGAGAATGAACAATTGGCCTTTTGTCCTGCCATTATAGTTCCTGGTATCTACTATTCAGATGACAAATTGCTTCAGACTAGGATCTTCTCCTATGCTGATACTCAGAGGCACCGTCTTGGACCAAACTATCTGCAACTCCCTGCTAATGCACCTAAGTGTGCTCATCACAACAATCACCACGAGGGTTTCATGAACTTTATACACCGAGATGAAGAGGTCAATTACTTCCCTTCAAGAATAGATCCTGCTCACCATGCCGAGAGGTATCCTCAGCCACCTGCTGTTTACACTGGAAAGCGTGAGAGGTGTGTAATTGAGAAGGAGAATAACTTCAAGCAGCCTGGAGAGAGATACAGATCTTGGCCATCAGACAGGCAAGAACGATTTATCCGTAGATGGGTGGATGCTTTGTCGGACCCTCGTGTCACCCACGAGATCCGTAACATCTGGATTTCTTACTGGTCTCAGGCGGACAAATCTCTTGGCTTGAAGCTTGCATCTCATCTCAATGTGAAGGCAGACATTTGA 3060 45.78 MEDHRPSSGYNTPFWTTNSGAPVWNNNSSLTVGSRGPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEVTHDIANLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFFIRDGMKFPDMVHALKPNPKSHIQENWRILDFFSHHPESLNMFTFLFDDIGIPQDYRHMDGSGVNTYTLINKAGKAHYVKFHWRPTCGVKSLLEEDAIRVGGSNHSHATQDLYDSIAAGNYPEWKLFIQTIDPDHEDRYDFDPLDVTKTWPEDILPLQPVGRMVLNKNIDNFFAENEQLAFCPAIIVPGVYYSDDKLLQTRIFSYSDTQRHRLGPNYLQLPANAPKCAHHNNHHEGFMNFMHRDEEVNYFPSRFDPARHAERYPHPPAVCTGKRERCVIDKENNFKEPGERYRSWTSDRQERFIRRWVDALSDTRVTHEIRSIWISYWSQADRSVGQKLASHLNIWKLRYEFVYVKFYVLALGFVESFGNPSSSAILNKKLRKDGDAINKAQATVSPARLQLSGSSLISSFNGSLQVFEFLQRPSSGYNTPFWTTNSGAPVWNNNSALTIGSRGPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEVTRDITHLTCADFLRAPGVQTPVIGNFDLVGNNFPVFFVRDGMKFPDMVHALKPNPKSQIQENWRILDFFSHHPESLHMFTFLFDDLGIPQDYRHMDGSGVNTYTLINKAGKAHYVKFHWRPTCGVKSLLDEEAIRVGGSNHSHATQDLYDSIAAGNYPEWKLFIQTIDPDHEDKYDFDPLDVTKTWPEDILPLQPVGRLVLNKNIDNFFAENEQLAFCPAIIVPGIYYSDDKLLQTRIFSYADTQRHRLGPNYLQLPANAPKCAHHNNHHEGFMNFIHRDEEVNYFPSRIDPAHHAERYPQPPAVYTGKRERCVIEKENNFKQPGERYRSWPSDRQERFIRRWVDALSDPRVTHEIRNIWISYWSQADKSLGLKLASHLNVKADI 1019
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25268800 25279233 + Lsi04G018050.1 Lsi04g01805 661854

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01805 1019 SMART Catalase_2 16 399 IPR011614 GO:0004096|GO:0020037
Lsi04g01805 1019 SMART Catalase_2 575 928 IPR011614 GO:0004096|GO:0020037
Lsi04g01805 1019 ProSiteProfiles catalase family profile. 571 1019 IPR018028 GO:0004096|GO:0006979|GO:0020037
Lsi04g01805 1019 ProSitePatterns Catalase proximal heme-ligand signature. 342 350 IPR002226 GO:0020037
Lsi04g01805 1019 PRINTS Catalase signature 132 150 IPR018028 GO:0004096|GO:0006979|GO:0020037
Lsi04g01805 1019 PRINTS Catalase signature 297 324 IPR018028 GO:0004096|GO:0006979|GO:0020037
Lsi04g01805 1019 PRINTS Catalase signature 29 52 IPR018028 GO:0004096|GO:0006979|GO:0020037
Lsi04g01805 1019 PRINTS Catalase signature 92 110 IPR018028 GO:0004096|GO:0006979|GO:0020037
Lsi04g01805 1019 PRINTS Catalase signature 113 130 IPR018028 GO:0004096|GO:0006979|GO:0020037
Lsi04g01805 1019 PRINTS Catalase signature 329 355 IPR018028 GO:0004096|GO:0006979|GO:0020037
Lsi04g01805 1019 ProSitePatterns Catalase proximal active site signature. 611 627 IPR024708 GO:0004096
Lsi04g01805 1019 PANTHER CATALASE 552 657 - -
Lsi04g01805 1019 Pfam Catalase-related immune-responsive 420 484 IPR010582 -
Lsi04g01805 1019 Pfam Catalase-related immune-responsive 949 1013 IPR010582 -
Lsi04g01805 1019 PANTHER CATALASE 552 657 IPR018028 GO:0004096|GO:0006979|GO:0020037
Lsi04g01805 1019 Gene3D Catalase core domain 658 1019 - -
Lsi04g01805 1019 ProSitePatterns Catalase proximal heme-ligand signature. 871 879 IPR002226 GO:0020037
Lsi04g01805 1019 Pfam Catalase 575 657 IPR011614 GO:0004096|GO:0020037
Lsi04g01805 1019 Pfam Catalase 16 396 IPR011614 GO:0004096|GO:0020037
Lsi04g01805 1019 Pfam Catalase 658 925 IPR011614 GO:0004096|GO:0020037
Lsi04g01805 1019 PANTHER CATALASE 658 1018 - -
Lsi04g01805 1019 PANTHER CATALASE 4 486 - -
Lsi04g01805 1019 ProSitePatterns Catalase proximal active site signature. 52 68 IPR024708 GO:0004096
Lsi04g01805 1019 Gene3D Catalase core domain 513 657 - -
Lsi04g01805 1019 Gene3D Catalase core domain 6 492 - -
Lsi04g01805 1019 SUPERFAMILY Heme-dependent catalase-like 9 488 IPR020835 GO:0020037
Lsi04g01805 1019 PANTHER CATALASE 658 1018 IPR018028 GO:0004096|GO:0006979|GO:0020037
Lsi04g01805 1019 PANTHER CATALASE 4 486 IPR018028 GO:0004096|GO:0006979|GO:0020037
Lsi04g01805 1019 ProSiteProfiles catalase family profile. 12 490 IPR018028 GO:0004096|GO:0006979|GO:0020037
Lsi04g01805 1019 CDD catalase_clade_1 573 1011 - -
Lsi04g01805 1019 SUPERFAMILY Heme-dependent catalase-like 559 1017 IPR020835 GO:0020037
Lsi04g01805 1019 CDD catalase_clade_1 14 482 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01805 K03781 katE, CAT, catB, srpA; catalase [EC:1.11.1.6] - csv:101202931 1011.91
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g01805 Lsi08g00787 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01805 Lsi-Chr4:25268800 Lsi08g00787 Lsi-Chr8:16250999 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g98 Blo01g01636 Blo12g00854 . Bda03g00319 Bpe02g00309 Bpe04g00280 Bma04g00287 Bma01g02409 Cmo05g00996 Cmo12g00616 Cma01g02012 Cma09g00054 Car01g01582 Car12g00658 . Cpe06g00023 Cpe07g00589 Bhi04g01227 . . . Hepe08g1506 . . Cla08g00942 Cam08g1392 Cec08g0974 Cco08g1097 Clacu08g1099 . Cre08g0883 . . . . Lsi04g01805 Csa04g02699 . Cme03g01342 . . Bda11g00972 . . . . . Sed08g1839 . . Cma12g00678 Cma05g00977 Car05g00858 Car09g00047 Cpe11g00788 Cpe02g00036 Bhi09g02890 Tan01g5104 Cmetu03g1562 . Hepe01g2339 Mch11g0058 . Cla11g01822 Cam11g1888 Cec11g1913 Cco11g1920 Clacu11g2052 Cmu11g1857 Cre11g2263 Lsi08g00787 . Chy07g00390 Cme07g00057
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0027432 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 2
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01805 Lsi_Chr04 FPKM 20.960966 21.413055 15.788401 15.480719 15.750486 17.149763 16.076233 10.046113 10.332455 10.42884