Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01806 ATGGATGATGGTATGTTATCACCAGCTACAATGTTGGATGCTCCAGCTGACACTGCCATGGATTTGGACTACATGGATGGACTGCTTTTGGATGGTTGCTGGTTAGAAACAGCAGATGGTACTGAGTTTCTTCATAGTAGCCCCTCAAGTTTTGGTGTCAACTTAGACCCTTTAATTGGATGGCCTGCTACAGAGATGAATGGTGATTTTAACATGATCCAGATTACAAGAAGTAATCAAGAAGAACCTAGGAAAATCTTGAGTGATGAGATGTCTTTGGGGCGGAAAAGAATTGATATGGGGCAAGAGGGATGTTCTGGTCAATCAGAAAACAATGGTTTTGAAGGTTCTGAATTGTGTAGAAGATTATGGATTGGACCTGGGGAACATCTGGGTTCTGCAACTTCTGTGATGGAGAGATTGATTAGAGCCGTTGGGTATATTAAAGATTTTGTAAGAGACAAAGATGTTCTTGTACAAGTATGGGTGCCTATAAATAAAGGGGGAAGAAGTGTTCTCATAACAAATGATCTGCCATTCTCTCAGAATTCCAGCTGCACAAGACTCACTAAATACCGGGACGTCTCTGTGAAATATGAATTCACTGCTGATGAAGATTCTAAAAATGCTTTGGGATTGCCTGGTCGGGTCTTCTCAAGAAAGGTTCCAGAGTGGACTCCTGATGTTCGATTCTTTCGAAGCGACGAATACCCGAGAGTCAATCATGCTCACGAGCACGATGTACGTGGAACTGTAGCACTTCCTATTTTTGAACAAGGTAGCAAGCACTGTTTAGGAGTCATTGAAGTTGTCATGGTTACCCAGCAGATCAAATATGGTTCAGAACTTGAGAATGTTTGCAAAGCTCTTGAGGCAGTCAAGCTTAGGAGCTCTGATGTTATTGGCCATCCCAATAAAAAGCAGGTATTTAACAGGTCCAACGAAGCTGTATTATTAGAGATTCAAAACACTTTGAAATCTGCTTGTGAAACGCATGGCTTGCCTTTGGCACAAACCTGGGCATCATGTATCCAACAAAGTAGAGGGGGTTGCAGGCACTCAGATGAGAACTACAGTTGTTGCGTTTCTACGGTAGACCGGGCTTGCTTTGTTGCTGATCAGGGAATTCAGGAATTTCATGAGGCATGCTCCGAGCATCATTTGCTAAAAGGCGAAGGCATTGTTGGGATGGCATTTAAATCTAACGAGCCGTGTTTCTCAAGTGATATTACATCCTTTTGTAACACAGAATATCCTCTTTCTCACCATGCGAAGCTGTTTGGATTACATGCTGCGGTTGCAATACGCCTTCGTTGCATTTATATTAGTAAAACCGATTTCGTACTGGAGTTCTTCCTGCCTGTAAATTGTAGAGATCCTGAAGAGCAGAGAGTGCTACTCACTTCATTGTCCACAATTATACAACGATCTTGCAGGAGCCTGCGTCTTGTAACAGATAAGGAATGTAGGGAGGAAAATTTGCAACAATCTTGTAGAAGTTTACATCTTGTTACAGATGTTAAACTTGGAGAGGAAAGTAACTTTGCATTTGGAGAGGCGGGTCTCAGTGCAAATGGAAGATCTGGCATGCAGGAAATGTCCAAGGGGGGCAAAACATCAGAAGTCCTAAGTTCCTCTGGTTACCAGCATCATGAATTTAATTACGATCTGAATGGAGTTGTCGAGGACAGTGAAGAGTGCGCGACTGTAGGTAATGGTAGCTTTTCTGATGTAGGTTTGGGAAGAACTGGTGAGAAAAGACGAACCAAGGTGGACAAAACTATCACCTTACAAGTTCTTCGGCAATATTTCGCGGGTAGCTTAAAAGATGCTGCAAAGAGCATTGGAGTTTGTCCTACCACATTGAAAAGGATATGTCGGCAACATGGGATTAAACGTTGGCCTTCTCGAAAAATAAAAAAGGTCGGTCACTCGTTGCAGAAACTCCAGCTCGTAATTGACTCGGTGGAAGGAGCATCTGGTGCTTTTCAAATTGGATCCTTGTATTCTAATTTCCAGGAGTTGGCCTCTCCAAATCTATCAGGTTCAGGTTCAGGTCTACCTTTTAGTGCAAAGATGGGAGATTGCTTGAAAACATCAAGCAATCAGAATGAAGTTGGTATGAGCAACCTCCAAGGTGCAGCATCGAAATCTCCATCCTCTTCATGCAGCCAAAGCTCGAGTTCGAGCCAATGCTTTTCTAGTCGGAGCCATCAGAATCTTCCCCATTGGAACGAAGCCGGAAGCTGTGAAGATCAAATAGGTGGAGAGAATCCTTGTGATGGAGAGCTAAAGAGGGTCAAAAGTGAAGTAGAGATACATGTATCAATTATGGAAGGATCAAACGTCCCTCGAAGATCCCAAAGCTGCAAATCTCTCTGCAAACATCCAGCCACTGAATGTCTAATGCACTCAGGGAAAGAAAGCGATGGAATAACCGAAACAGTTGAAGTTCAGAGAGTAAAAGTCAGCTACGGGGAGGAGAAAATCCGGTTTCGAGTTCATAACCGCTGGAGATACGAAGAGTTACTGAATGAAATCGCAAAACGATTTAGTATCAGTGACATAAGTAAATTTGATCTCAAGTATTTAGATGATGAATCTGAATGGGTGTTATTAACAAGTGATACAGATCTGCAGGAGTGTTTTCATGTTTACAAATCGTCTCAGGTCCAAACAATAAAACTTTTGCTACAGGTTTCTCGTCGCCATAAGAGAAACTCTTTTGCAAGCAGTGGCTTCTCATGA 2748 42.58 MDDGMLSPATMLDAPADTAMDLDYMDGLLLDGCWLETADGTEFLHSSPSSFGVNLDPLIGWPATEMNGDFNMIQITRSNQEEPRKILSDEMSLGRKRIDMGQEGCSGQSENNGFEGSELCRRLWIGPGEHLGSATSVMERLIRAVGYIKDFVRDKDVLVQVWVPINKGGRSVLITNDLPFSQNSSCTRLTKYRDVSVKYEFTADEDSKNALGLPGRVFSRKVPEWTPDVRFFRSDEYPRVNHAHEHDVRGTVALPIFEQGSKHCLGVIEVVMVTQQIKYGSELENVCKALEAVKLRSSDVIGHPNKKQVFNRSNEAVLLEIQNTLKSACETHGLPLAQTWASCIQQSRGGCRHSDENYSCCVSTVDRACFVADQGIQEFHEACSEHHLLKGEGIVGMAFKSNEPCFSSDITSFCNTEYPLSHHAKLFGLHAAVAIRLRCIYISKTDFVLEFFLPVNCRDPEEQRVLLTSLSTIIQRSCRSLRLVTDKECREENLQQSCRSLHLVTDVKLGEESNFAFGEAGLSANGRSGMQEMSKGGKTSEVLSSSGYQHHEFNYDLNGVVEDSEECATVGNGSFSDVGLGRTGEKRRTKVDKTITLQVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVEGASGAFQIGSLYSNFQELASPNLSGSGSGLPFSAKMGDCLKTSSNQNEVGMSNLQGAASKSPSSSCSQSSSSSQCFSSRSHQNLPHWNEAGSCEDQIGGENPCDGELKRVKSEVEIHVSIMEGSNVPRRSQSCKSLCKHPATECLMHSGKESDGITETVEVQRVKVSYGEEKIRFRVHNRWRYEELLNEIAKRFSISDISKFDLKYLDDESEWVLLTSDTDLQECFHVYKSSQVQTIKLLLQVSRRHKRNSFASSGFS 915
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25286568 25292132 + Lsi04G018060.1 Lsi04g01806 661855

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01806 915 ProSiteProfiles PB1 domain profile. 818 901 IPR000270 GO:0005515
Lsi04g01806 915 SUPERFAMILY CAD & PB1 domains 819 902 - -
Lsi04g01806 915 CDD PB1_NLP 820 899 IPR034891 -
Lsi04g01806 915 PANTHER PROTEIN NLP8 17 912 IPR045012 GO:0003700
Lsi04g01806 915 Gene3D - 816 900 - -
Lsi04g01806 915 PANTHER PROTEIN NLP4 17 912 - -
Lsi04g01806 915 Pfam RWP-RK domain 594 642 IPR003035 -
Lsi04g01806 915 SMART PB1_new 818 901 IPR000270 GO:0005515
Lsi04g01806 915 Pfam PB1 domain 820 900 IPR000270 GO:0005515
Lsi04g01806 915 ProSiteProfiles RWP-RK domain profile. 581 662 IPR003035 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01806 - - - bhj:120085671 1691.78
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01806 Lsi-Chr4:25286568 Lsi08g00840 Lsi-Chr8:16862633 1.37E-07 dispersed
Lsi07g00359 Lsi-Chr7:3818228 Lsi04g01806 Lsi-Chr4:25286568 3.05E-13 transposed
Lsi07g00746 Lsi-Chr7:8165569 Lsi04g01806 Lsi-Chr4:25286568 9.14E-13 transposed
Lsi01g00529 Lsi-Chr1:4340875 Lsi04g01806 Lsi-Chr4:25286568 3.30E-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g95 Blo01g01637 Blo12g00853 . Bda03g00320 Bpe02g00307 Bpe04g00281 . Bma01g02411 . . Cma01g02014 Cma09g00053 Car01g01583 . . Cpe06g00022 . . . . . . . . . . . . . . . Cone4ag2020 Cone7ag1936 . Cone20ag0023 Lsi04g01806 Csa04g02701 . . Blo17g00903 . Bda11g00974 . . . . . Sed01g2434 Cmo01g02071 Cmo09g00055 . . . Car09g00046 . Cpe02g00035 Bhi09g02885 Tan01g5108 Cmetu07g0208 . . Mch11g0056 . Cla11g01823 Cam11g1889 Cec11g1914 Cco11g1922 Clacu11g2054 Cmu11g1859 Cre11g2265 . . Chy07g00393 Cme07g00054
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003158 2 5 3 1 2 0 2 1 0 1 1 1 2 1 1 2 0 3 2 1 1 1 1 1 1 1 1 4 4 2 48
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25227 PF00564 PB1 3.30E-19 CL0072 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01806 Lsi_Chr04 FPKM 2.524793 0.0 0.0 0.0 1.70692 0.0 1.964265 0.279635 0.0 0.0