Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01809 ATGAGCTGTTTTTCTTGCATTCGTGCTCGTTGTAAAGATGCCAGCAAGGTCGAAATTGACAATGAAACTGGAAAGGGGAAGGAATTACAAACCAGAAGTGGAAACAACCGGAAATGTGGAGCTGCACGAAGCTTCCCGTTTCGTGAATTGGCGACGGCCACGAGAGGTTTCAAGGAAGTGAACTTGATTGGTGAAGGGGGTTTTGGAAGAGTTTACAAAGGCCGATTAGAAACAGGCCAGGTTGTTGCGATTAAACAACTCAATCATGATGGTCTTCAAGGATATCAGGAATTCATCGTTGAAGTTCTCATGTTAAGTTTATTGCATCACTGTAATCTTGTCAAGTTGATTGGTTATTGTACTGATGGAGATCAAAGACTATTGGTCTACGAGTATATGTCGATGGGAAGCTTGGAAAACCATCTTTTTGGTTTGTCCCCGGAACGACCGCCATTGAGTTGGAACACTCGAATCAAGATTGCTCTTGGTGCAGCCCAGGGCCTTGAGTATCTTCACTGCACAGCAAATCCGCCAATCATCTACCGTGACTTGAAATCTGCAAATATTTTACTGGATGATGACTTCAACCCAAAGCTATCGGATTTTGGACTGGCAAAGTTAGGACCGGTTGGTGACAACACTCATGTTTCCACCAGAGTTATGGGAACGTACGGCTATTGTGCACCGGAGTACGCCATGAGTGGCAAACTGACCCTTAAATCTGATATTTATTGCTTTGGTGTAGTTCTCTTGGAGATAATTACAGGCAGGAAAGCTATAGACTCCACCAAGAAACCTGGAGAGCAAAATCTGGTTGCTTGGTCTCGCCCTTTTCTAACAGACCGAAGGAAGTTTGTTCAATTAGTCGACCCGCTGCTGGAAGGGCGCTACCCTCTTCGTTGTCTACACCATGCAATTGCAATTGCTGCAATGTGTCTCCAGGAGCAACCAATGTTCCGGCCAATTATCAGTGATATCGTTGTGGCCCTTGAGTACTTAGCTTCTCAGAGTTACACATCAGAACAACCGAGGGACGGCGTGCCTAGTCCCTCGAAACTATCTCCTCAAGGGGACAGGAGTGTCCATGTTCAAGAATCAAGATACGGAAAGAATTCGACATCCAAGTAA 1128 45.3 MSCFSCIRARCKDASKVEIDNETGKGKELQTRSGNNRKCGAARSFPFRELATATRGFKEVNLIGEGGFGRVYKGRLETGQVVAIKQLNHDGLQGYQEFIVEVLMLSLLHHCNLVKLIGYCTDGDQRLLVYEYMSMGSLENHLFGLSPERPPLSWNTRIKIALGAAQGLEYLHCTANPPIIYRDLKSANILLDDDFNPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYCFGVVLLEIITGRKAIDSTKKPGEQNLVAWSRPFLTDRRKFVQLVDPLLEGRYPLRCLHHAIAIAAMCLQEQPMFRPIISDIVVALEYLASQSYTSEQPRDGVPSPSKLSPQGDRSVHVQESRYGKNSTSK 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25327852 25331257 - Lsi04G018090.1 Lsi04g01809 661858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01809 375 Gene3D Phosphorylase Kinase; domain 1 27 132 - -
Lsi04g01809 375 SUPERFAMILY Protein kinase-like (PK-like) 40 331 IPR011009 -
Lsi04g01809 375 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Lsi04g01809 375 Gene3D Transferase(Phosphotransferase) domain 1 133 347 - -
Lsi04g01809 375 SMART serkin_6 57 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g01809 375 CDD STKc_IRAK 63 331 - -
Lsi04g01809 375 PIRSF ILK 8 346 - -
Lsi04g01809 375 PANTHER OS07G0668900 PROTEIN 26 358 - -
Lsi04g01809 375 Pfam Protein kinase domain 57 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g01809 375 PANTHER OS07G0668900 PROTEIN 26 358 - -
Lsi04g01809 375 ProSiteProfiles Protein kinase domain profile. 57 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g01809 375 ProSitePatterns Protein kinases ATP-binding region signature. 63 85 IPR017441 GO:0005524
Lsi04g01809 375 MobiDBLite consensus disorder prediction 338 375 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi04g01809 Lsi08g00783 CCT
Lsi04g01809 Lsi08g00783 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01809 Lsi-Chr4:25327852 Lsi08g00783 Lsi-Chr8:16217990 1.80E-169 dispersed
Lsi10g01319 Lsi-Chr10:17398309 Lsi04g01809 Lsi-Chr4:25327852 4.76E-128 dispersed
Lsi04g01809 Lsi-Chr4:25327852 Lsi03g02064 Lsi-Chr3:31958333 6.73E-162 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83595 PF00069 Pkinase 5.50E-45 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01809 - - csv:101203407 711.449