Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01811 ATGGGTGAGGTTTCCAAATCGACGATGAAGAAGAAGAAGAAAAAGGGCCGCCCTTCTCTTTTAGATCTCCAAAAGCGCTTCCTGAAACAGCAAAAGTTGCAGGAACAACATGAACAACCGCTTAACTCTTTCGACTTTACCTCGAACCCTAGGATCCCATCTTGTCAGAATCGCAATGTTCACCCGACGACAGAGCGCGTCACCGGCGGCGAAGATGGCGACGACGACGACGACGAGCGCATTGAGAAGAAGCATAAGCCCTTACTCGGTTTAACTTCTCGTCAAAACTATCCAACATTGTCCGCTTATTCTTTGCGTAAATCGGCCTCCTGCGGTGAAGATTCCGAGGCGACCCTCAAGCGTCGCAGAATCGGCGCAGCCCAGTTTGAATCTTCTGAAGTGAGAGAAGAAAAAGCTTTGAAAGCGACAGACACTGCACATGGGTCGCAGGTGGAGTCTGGTCCCACAACAACTTTGCCAGACAAAAAGTTGTTGATTTTCATCCTTGATAGACTTCAAAAAAAAGACACCCATGGAGTATTTTCCGAACCCGTGGATCCAAACGATCTTCCTGATTATCATGTCATTATTGAGAATCCTATGGATTTTGGGACTGTGAGGGCGAAATTAGATGGAGGAGCTTACACGAATTTGGAACAGTTTGAAGAAGACATTTTTTTGATATGTTCAAATGCAATGGAGTATAATGCTTCTGATACTGTTTTCTTCCGTCAGGCACATTCCATACAAGAACTTGTGAAGAAAGATTTTGAGAATTTGAGGCGAGAGAGCAGTGATGAAAGTGAACCAGAACAGAAAGTTGTGAGGAGAGGTAGGCCACCAGGAAAGAGCCTGAAGAGATCTTTAGGTCTTGGTAACCCTATTGAAAGTAGTGGGGCAGAGTTCTGCTCAGGTGCTACTCTTGCTTCTGGATGTGACGATTCCTACAACGTCAATGGTTACAATTTGAGAAGAGCACGCTCCGCCTTCAGGCACCTGCCTGCAGATCCTCTAGCAAGAACATCTACAGCTCAACATGGCGAAACTTTGGCCAGCTGGTTGCCTGAATGGAAAAATGAGTTTCCAGCTTCAGTTTTGAAGGGTGTTCTTAAAAGTGGAAAGAATGATAATATGGCTGTGAATGAAAATAGACGTGATACCTATAATCGTTCGATGTCCTGCGGGAATTGGCCATCCGTCTTTGGTAACCTTGAAGGAGATTTGAAGAAACTAATTACAGTGGGTTTGCATACTGAGCATGGTTATGCAAGAAGCTTAGCTCTCTTTGCGGCCGATCTTGGTCCTGCAGTTTGGAATATCGCTTTAAAGAAAATTGAAAGTATTAGTCGGGAGCTGGGGCGAGTATTGATACAAGAAATTGAAATGCTACAGCAGCATCGCATGTTGCCTGCGGATGGAGGCTCATCCGACATGAAAACAGTGGCAGAGAGCACGGCTGTTCTTCCCTGTAGAAGCATATCTGGCTCTAACATTGGTGTTCCGAATAATTTTTTGAAACTCAGCGAAGATGCTGATAATGAAATGGATAAAGTGAGAAATTCCGAAAGCGAGACAGTATTGCTAGACAGAAGTAGAGGTGTGATAGGATCGGCAACTTGTATACCGAACGAGCAGAACCATCAGAAAACAATGGTTCCTTCAAACATCCACCACACAAATGGTAATATTTTCCCCCATTTTTCACAAGAAATGAGAATGGTAAGACTTGATTCTATTCTTGCTGGGACGTCTTGTTCGGACGACTCTACAGTGCCTTGTCAAGTGCATGGTACATCTCCAGCTCTCAACAATGATTCTTTCCAAATCCCTGCCAGTGCTGGTGATATGGATTTGTTAAACCAAGCTGGAATGCCAAAACTTGCAGAAGATGCCTCTCAGTTACACACTCTGTGGCATTCACCGGCCCGCGTCTACTTTCAGGACTCGCTTGATGCACATCAAGACGAGCGTGGTGAAAAGGCACGTTGGCAAGAATTATCAACACGTCCTGTGCTAGATTCAATCACCTTCAATCCTGACCTTAATTTTGGATTAGGCTTATCTGCTGCACCCAATTCTAATCTGCAGATTCTTTCGCAAATTCAACCCGATTTAGTATTGCAGCTCTGA 2130 44.74 MGEVSKSTMKKKKKKGRPSLLDLQKRFLKQQKLQEQHEQPLNSFDFTSNPRIPSCQNRNVHPTTERVTGGEDGDDDDDERIEKKHKPLLGLTSRQNYPTLSAYSLRKSASCGEDSEATLKRRRIGAAQFESSEVREEKALKATDTAHGSQVESGPTTTLPDKKLLIFILDRLQKKDTHGVFSEPVDPNDLPDYHVIIENPMDFGTVRAKLDGGAYTNLEQFEEDIFLICSNAMEYNASDTVFFRQAHSIQELVKKDFENLRRESSDESEPEQKVVRRGRPPGKSLKRSLGLGNPIESSGAEFCSGATLASGCDDSYNVNGYNLRRARSAFRHLPADPLARTSTAQHGETLASWLPEWKNEFPASVLKGVLKSGKNDNMAVNENRRDTYNRSMSCGNWPSVFGNLEGDLKKLITVGLHTEHGYARSLALFAADLGPAVWNIALKKIESISRELGRVLIQEIEMLQQHRMLPADGGSSDMKTVAESTAVLPCRSISGSNIGVPNNFLKLSEDADNEMDKVRNSESETVLLDRSRGVIGSATCIPNEQNHQKTMVPSNIHHTNGNIFPHFSQEMRMVRLDSILAGTSCSDDSTVPCQVHGTSPALNNDSFQIPASAGDMDLLNQAGMPKLAEDASQLHTLWHSPARVYFQDSLDAHQDERGEKARWQELSTRPVLDSITFNPDLNFGLGLSAAPNSNLQILSQIQPDLVLQL 709
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25337478 25341787 - Lsi04G018110.1 Lsi04g01811 661860

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01811 709 MobiDBLite consensus disorder prediction 260 278 - -
Lsi04g01811 709 CDD Bromodomain 161 257 - -
Lsi04g01811 709 PANTHER BROMODOMAIN CONTAINING PROTEIN 8 447 - -
Lsi04g01811 709 SMART bromo_6 154 262 IPR001487 GO:0005515
Lsi04g01811 709 SUPERFAMILY Bromodomain 153 263 IPR036427 GO:0005515
Lsi04g01811 709 MobiDBLite consensus disorder prediction 260 292 - -
Lsi04g01811 709 MobiDBLite consensus disorder prediction 1 80 - -
Lsi04g01811 709 ProSitePatterns Bromodomain signature. 178 235 IPR018359 -
Lsi04g01811 709 PANTHER BROMODOMAIN-CONTAINING PROTEIN-RELATED 8 447 - -
Lsi04g01811 709 MobiDBLite consensus disorder prediction 34 64 - -
Lsi04g01811 709 PRINTS Bromodomain signature 190 206 IPR001487 GO:0005515
Lsi04g01811 709 PRINTS Bromodomain signature 206 224 IPR001487 GO:0005515
Lsi04g01811 709 PRINTS Bromodomain signature 224 243 IPR001487 GO:0005515
Lsi04g01811 709 ProSiteProfiles Bromodomain profile. 173 243 IPR001487 GO:0005515
Lsi04g01811 709 Pfam Bromodomain 168 247 IPR001487 GO:0005515
Lsi04g01811 709 Gene3D - 157 279 IPR036427 GO:0005515
Lsi04g01811 709 MobiDBLite consensus disorder prediction 135 157 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01811 K22184 BRD9; bromodomain-containing protein 9 - csv:101217603 1115.14
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01898 Lsi-Chr2:24909436 Lsi04g01811 Lsi-Chr4:25337478 2.14E-68 dispersed
Lsi02g02131 Lsi-Chr2:27545024 Lsi04g01811 Lsi-Chr4:25337478 1.66E-06 dispersed
Lsi04g01811 Lsi-Chr4:25337478 Lsi01g00196 Lsi-Chr1:1861508 1.49E-12 dispersed
Lsi11g01285 Lsi-Chr11:21456314 Lsi04g01811 Lsi-Chr4:25337478 3.92E-96 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g88 . . . Bda03g00322 . Bpe04g00283 Bma04g00289 . . . Cma01g02019 . Car01g01587 . . . . . . . . . . . . . . . . . . Cone4ag2023 Cone7ag1940 . . Lsi04g01811 Csa04g02708 . . . . . . . . . . Sed13g2199 Cmo01g02077 . . . . . . Cpe02g00031 Bhi09g02875 Tan01g5115 Cmetu07g1520 . Hepe01g2345 Mch11g0053 . Cla11g01827 Cam11g1894 Cec11g1919 Cco11g1927 Clacu11g2058 Cmu11g1863 Cre11g2270 . . Chy07g00397 Cme07g00050
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011763 1 1 0 1 1 0 1 0 0 1 1 1 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01811 Lsi_Chr04 FPKM 1.575758 1.627057 2.566449 4.093156 2.523403 2.63699 2.639446 0.849683 0.734845 2.697667