Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01814 ATGATGGAGTGGCAGAACCAGCAGCAACAGAACCAAACTGAGCAATTGCAAATGCAAATGCAGGTTGAGCAATTGAGCAACGCCGATGGAGTTAGTGGCCTCTACGTCAAGGTGATGACCGATGAGCAAATGGAGCTTCTCAGGCAGCAGATCTCTGTCTATGCTTCCATATGTGAACAGCTTGTCGAGATGCACAAGGCAATCACTGCCCAGCAGGACCTTGCGGGAATGAGGCTTGGGAATCTTTACTGTGATCCAATAATGGCATCTGCTGCTGGTCACAAGATAACTGCTAGGCAGAGGTGGACGCCTACGCCTGTGCAGCTCCAAATTCTTGAGCAGATCTTTGATGAGGGCAATGGAACCCCAAGCAAGCAGAAGATCAAGGATATAACTCTACAGCTGACACAACATGGTCAAATTTCAGAAGCAAACGTTTATAATTGGTTTCAAAACAGAAGGGCTCGTTCAAAAAGAAAGCAAGCAAATTCAGTACCAAATAATGCAGACTCAGAACCAGAGACAGAAGTTGATTCTCCAAAGGAGAAAAAGACTAAACCAGAAACCTTCCAAACTTATGAACATTTCGTTTCGAAGTCAGGCAACATGTACTCTCAGAGAACTGATTTAAGTAATGAAATGCTTTCCTTTGATGCACAGTCGAATAAAGGGGAGCCCATGTTTCAGTCTTTCGGAGCTGGTCATATCAGTCAGATGACTCCAATACAGAATCATAGTATGTCACTCACTCTGTCTTTCCAGGAGTTACACATTTGA 777 44.27 MMEWQNQQQQNQTEQLQMQMQVEQLSNADGVSGLYVKVMTDEQMELLRQQISVYASICEQLVEMHKAITAQQDLAGMRLGNLYCDPIMASAAGHKITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLTQHGQISEANVYNWFQNRRARSKRKQANSVPNNADSEPETEVDSPKEKKTKPETFQTYEHFVSKSGNMYSQRTDLSNEMLSFDAQSNKGEPMFQSFGAGHISQMTPIQNHSMSLTLSFQELHI 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25353981 25355478 + Lsi04G018140.1 Lsi04g01814 661863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01814 258 ProSiteProfiles 'Homeobox' domain profile. 95 160 IPR001356 GO:0003677
Lsi04g01814 258 PANTHER - 2 231 - -
Lsi04g01814 258 SUPERFAMILY Homeodomain-like 98 161 IPR009057 -
Lsi04g01814 258 SMART HOX_1 97 164 IPR001356 GO:0003677
Lsi04g01814 258 Pfam Homeodomain 99 159 IPR001356 GO:0003677
Lsi04g01814 258 MobiDBLite consensus disorder prediction 174 188 - -
Lsi04g01814 258 CDD homeodomain 99 161 IPR001356 GO:0003677
Lsi04g01814 258 Gene3D - 101 165 - -
Lsi04g01814 258 MobiDBLite consensus disorder prediction 157 188 - -
Lsi04g01814 258 PANTHER WUSCHEL-RELATED HOMEOBOX 13 2 231 IPR044559 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01814 Lsi-Chr4:25353981 Lsi07g01059 Lsi-Chr7:15961952 1.45E-92 dispersed
Lsi04g01814 Lsi-Chr4:25353981 Lsi02g00230 Lsi-Chr2:1934707 3.78E-14 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25229 PF00046 Homeodomain 7.80E-18 CL0123 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01814 - - bhj:120085747 450.669