Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01814 ATGATGGAGTGGCAGAACCAGCAGCAACAGAACCAAACTGAGCAATTGCAAATGCAAATGCAGGTTGAGCAATTGAGCAACGCCGATGGAGTTAGTGGCCTCTACGTCAAGGTGATGACCGATGAGCAAATGGAGCTTCTCAGGCAGCAGATCTCTGTCTATGCTTCCATATGTGAACAGCTTGTCGAGATGCACAAGGCAATCACTGCCCAGCAGGACCTTGCGGGAATGAGGCTTGGGAATCTTTACTGTGATCCAATAATGGCATCTGCTGCTGGTCACAAGATAACTGCTAGGCAGAGGTGGACGCCTACGCCTGTGCAGCTCCAAATTCTTGAGCAGATCTTTGATGAGGGCAATGGAACCCCAAGCAAGCAGAAGATCAAGGATATAACTCTACAGCTGACACAACATGGTCAAATTTCAGAAGCAAACGTTTATAATTGGTTTCAAAACAGAAGGGCTCGTTCAAAAAGAAAGCAAGCAAATTCAGTACCAAATAATGCAGACTCAGAACCAGAGACAGAAGTTGATTCTCCAAAGGAGAAAAAGACTAAACCAGAAACCTTCCAAACTTATGAACATTTCGTTTCGAAGTCAGGCAACATGTACTCTCAGAGAACTGATTTAAGTAATGAAATGCTTTCCTTTGATGCACAGTCGAATAAAGGGGAGCCCATGTTTCAGTCTTTCGGAGCTGGTCATATCAGTCAGATGACTCCAATACAGAATCATAGTATGTCACTCACTCTGTCTTTCCAGGAGTTACACATTTGA 777 44.27 MMEWQNQQQQNQTEQLQMQMQVEQLSNADGVSGLYVKVMTDEQMELLRQQISVYASICEQLVEMHKAITAQQDLAGMRLGNLYCDPIMASAAGHKITARQRWTPTPVQLQILEQIFDEGNGTPSKQKIKDITLQLTQHGQISEANVYNWFQNRRARSKRKQANSVPNNADSEPETEVDSPKEKKTKPETFQTYEHFVSKSGNMYSQRTDLSNEMLSFDAQSNKGEPMFQSFGAGHISQMTPIQNHSMSLTLSFQELHI 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25353981 25355478 + Lsi04G018140.1 Lsi04g01814 661863

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01814 258 ProSiteProfiles 'Homeobox' domain profile. 95 160 IPR001356 GO:0003677
Lsi04g01814 258 PANTHER - 2 231 - -
Lsi04g01814 258 SUPERFAMILY Homeodomain-like 98 161 IPR009057 -
Lsi04g01814 258 SMART HOX_1 97 164 IPR001356 GO:0003677
Lsi04g01814 258 Pfam Homeodomain 99 159 IPR001356 GO:0003677
Lsi04g01814 258 MobiDBLite consensus disorder prediction 174 188 - -
Lsi04g01814 258 CDD homeodomain 99 161 IPR001356 GO:0003677
Lsi04g01814 258 Gene3D - 101 165 - -
Lsi04g01814 258 MobiDBLite consensus disorder prediction 157 188 - -
Lsi04g01814 258 PANTHER WUSCHEL-RELATED HOMEOBOX 13 2 231 IPR044559 GO:0003700
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01814 - - - bhj:120085747 450.669
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01814 Lsi-Chr4:25353981 Lsi07g01059 Lsi-Chr7:15961952 1.45E-92 dispersed
Lsi04g01814 Lsi-Chr4:25353981 Lsi02g00230 Lsi-Chr2:1934707 3.78E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g82 Blo01g01638 . . Bda03g00324 Bpe02g00305 . Bma04g00291 Bma01g02412 . . Cma01g02023 Cma09g00047 Car01g01590 . . Cpe06g00017 . . . . . . . . . . . . . . . . . . . Lsi04g01814 Csa04g02711 . . . . Bda11g00976 . . . . . Sed01g2425 Cmo01g02079 Cmo09g00049 . . . Car09g00039 . Cpe02g00030 Bhi09g02871 Tan01g5120 Cmetu07g0405 . Hepe01g2347 Mch11g0050 . Cla11g01830 Cam11g1897 Cec11g1922 Cco11g1932 Clacu11g2061 Cmu11g1866 Cre11g2274 . . Chy07g00400 Cme07g00048
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi02g00230 CCT,ECH 1 196 Wox Gene Family AT3G18010 54.9 2.5e-47 186.4
Lsi06g01287 CCT,ECH 20 187 Wox Gene Family AT3G18010 57.8 3.1e-42 169.5
Lsi03g01692 . 25 257 Wox Gene Family AT3G03660 52.1 4.7e-47 185.3
Lsi07g01059 . 1 276 Wox Gene Family AT4G35550 51.2 8.5e-72 267.3
Lsi04g01814 . 1 189 Wox Gene Family AT4G35550 62.9 4.5e-57 218.4
Lsi08g01489 . 125 278 Wox Gene Family AT1G46480 57.7 3.6e-40 161.8
Lsi02g00230 CCT,ECH 1 196 Wox Gene Family AT3G18010 54.9 2.5e-47 186.4
Lsi06g01287 CCT,ECH 20 187 Wox Gene Family AT3G18010 57.8 3.1e-42 169.5
Lsi08g01489 . 125 278 Wox Gene Family AT1G46480 57.7 3.6e-40 161.8
Lsi03g01692 . 25 257 Wox Gene Family AT3G03660 52.1 4.7e-47 185.3
Lsi07g01059 . 1 276 Wox Gene Family AT4G35550 51.2 8.5e-72 267.3
Lsi04g01814 . 1 189 Wox Gene Family AT4G35550 62.9 4.5e-57 218.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001223 3 4 2 3 2 1 4 1 1 2 2 2 4 2 2 3 1 2 3 1 2 2 2 2 2 2 1 8 3 3 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25229 PF00046 Homeodomain 7.80E-18 CL0123 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01814 Lsi_Chr04 FPKM 4.506975 5.096301 8.111387 8.402028 13.551759 13.794436 13.739505 0.534965 0.574386 0.373647