Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01816 ATGGTATATGCAAAAGCGGGGACGAACCCTAAATCCAAGTCCAATCCGACTTATCAGGTCACGAAGAATGTGTACCCGATTGGTGGCATCCAAGTGGAATTCCCATTCCGACCATACGGTTCGCAACTCGCGTTCATGGGCAGAGTTATATCCACCCTTGATCGAGCCCAGCGAGAGGGCCATTGCCACGCATTGCTGGAATCTCCGACTGGAACCGGGAAGTCGCTTTCACTTCTGTGCTCGAGTCTCGCTTGGCAGAAGAACTACAAGATAAAGAATCAGGATGGTAATTCATGTCACTCGAAGCCCGCTCCAGAGGCTGTCACTGATCCTCTCGGTTTTGGCGGTGGATTTATTCCTGAAGTGCAGCCGTCAAGTAAGTTTGCATGTCTTCACCCTGATCATCCGATCATCTTGAATTCACGAATTCGATTGAGTGGCTTACGTCGTGAGGATATATTTAGGGCGATAGCTTACGACGACATAGGTTTTCTTTGCGCGTCGCCTGCAACAAAACATGTTCATCATCTTAAACGGCTAACTTTGTCGACGCTATTGTGGAATGCGGACGCTGGCAAGCTTTTGTTTTACATGTGGTTCTTTGTTAACTTAACTTCTTCTGACGAATATGTTGCTCTAGTGTCTGTAGATACAGAGTCATCTCTTCCAGTGCCAAACAACAAAAGTCAGAATAAAAAAACAGCCCCGACCATATACTATGCTTCGAGGACACATACACAGATATCACAAGTGATCCGCGAGTATAGGAAAACTACCTATCGAGTGCCAATGGCAGTGTTGCTGGTTTTGGTTGTAAGAATCCCTTGGCTTCCCGCTTCCTCTCCTGTCAGCTGTGGTTCAGCTGCAATGCATTTCTGGGTAGTCCTCCTCAGCAAACTACTTTTGAAGGATCAAGATGCAGGATGCTGTGAATTTAAAAACGCAAACAAGGTTAAAAGTCATCCAACTCTTCAGAAAGGAGGATGTCATGAGGTTCATGACATTGAAGATTTGGTGAAAGTTGGAGAAGTTATAAAAGGTTGTTCATATTATGCAGCTCGTTCTATGTCAGACGATGCACAGCTGGTGTTTTGCCCATATAGCTATATTATCAATCCAGTTATTCGAGGAGCAATGGATGTAGATATTAAGGGTGCGATTGTGATCCTTGATGAAGCCCACAATATCGAGGATATTGCTCGTCATGCTGGTAGTGTGGATGTTGAAGAGGATACTTTAAATAGTAGTTGGACTGGCAATCATGCTCAAAGGGAGCTCCAAGAAGCTAATATAACTCAACAATGTTTCCCCATTTTGCTTGAATGTGCAACGAAGGCTATTAAAGCAGCTTCAGATACGGAGTCTGATGATGCACATTTGAGTGGCCTGTCAGTGATAACACTGGAAGGGTTATTCTCTTCACTGACATATTTCTTCTCAAGAAATGGTTGCCACATGTCTGATTACCAGCTTGCATTACAACGCTACGTTAAAAGAGATCCTGGAAAAGCTTATGGTGACTGGACGCTTACTTTAAGTTTGTGGTGCTTGAATCCAGCTGTTGTATTTAGAGACATTGGCGATCTTTCCTTATCAGTTATTTTGACATCTGGGACCCTGTCACCTATGAATTCCTTCTCATCTGAACTAGGAGTTCAGTTTGGAACTTCACTGGAAGCTCCTCACGTAATTGACGTGGAAGCTCAGGTGTGGCCAGCTATTATATCAACTGGTCCAGGAAACTATCCGCTCAATGGAAGTTATAAAACGGCAGATGGATATGCATTCCAGGATGCTCTAGGAAAATCTTTGGAGGAGATATTTTTTATCGCTCCTGGTGGCTGTCTTGTGTTCTTCCCTAGTTATAAGCTGATGGAGAAACTCCAAAATCGTTGGTCTGAAACTGGTCAATGGTCTCGACTGAATGCAAGGAAGTCCCTTTTTGTTGAGCCAAGAGGAGGAGCTCAAGAGGATTTTGATTCCATTTTGAAAGGTTATTATGATACTATACGTCTTGGTGATAACTTTGCAGTCGGGAAGAAGAGGCGAGGTAAGAAGGTTAAACCCAATCACCCATATGTGGTTGGCTGTGAAAATCCCAAGGAAGGTGCAGCACTCCTTGCAGTTTTTCGAGGAAAGGTTTCAGAAGGAATAGACTTTTCTGATGATAATGCTAGAGTGGTTATAATAGTTGGTATTCCATTTCCAAATATAAATGATATTCAAGTTGCGCTGAAGAAAAAGTTCAATGACACATATAAAATGTCCAAAAACCTTTTAAGTGGAAATGAGTGGTATTGTCAACAGGCCTTCCGTGCTTTAAATCAAGCTGCAGGACGTTGTATTCGACACAAGTTTGACTATGGTGCCATTGTACTATTAGATGAGCGTTTCCAGGAAGAGAGGAACAGGACGTACATTTCAAAGTGGCTAAGAAAATCCATTAAACAATTTGATAACTTTGAACAGTCTATGAAGGAGCTGAAATCCTTTTTCAGCCATATTAAGGCTCTTGAAGATGCGAAAAACTGTATAATTGATCTGGAGTGCAGTGTTGAAACAGAAACGAGGAACCCTGAGTTTCTATCTATGAATACCGTTCTTGAAGTTCCAGATTCACCAATTGTGCAGGAGACTCCTTGTGTTGATATTGGTGGCGCCACTAGTCCAGGAGACTCCAAAGGTGAAAGATCGACTTCAACCATAATTGAGGCCTATTCTGAGTTTCCTGATCAATTATCTTATCATTCATTACCTTTGATCAAATCAACAAGATCTCCTCTTACATCTGAATCTTCAATTCTACATACACCTGAAAGAAATGTTGCTGCAAATGCATACAGCTTTGCACGAGATACAGAATCTTCTTTGAATATGAGTGTAAATTCTCATACCCAGAAAAGGAGGAAGTCTATTGGCTTAACTATTCCAAAACTTGCTCAAGAAGAGTTTGTTGCTGATCCCAAAACCAAAAATCCTGAATGCAACAGTCTGGCTAGCTCAATAATCAGCAGAAATTTGACTAGCCCAAAAGATACTAGTTATGAAATTCTTCTCACAGAAAAGAAGTCTAAGAGTTCAAATGTCAGCCAAGTGCTCAAGTTAAATGACACTGTTCCTGTTTGTCTGTCTTCTGGCCTTCCAATGGACAAAAAGTTGCATCTGTCTTGTGCACTTTGTAGAAGCCCACTTGGTCGCCCAGAAAACCATTTAAACGTAACGTGCTCATTTACTGTATCATCAAAAACACACTTAATATCGAAATATAAGGAAATGTTGAAGGCTCAAACTGCCAATTCACCAACAAGTATACTGCTTATTATTACAGACATCTTGTTTGTTAACCAGAGGGTCCTAGTTAGGTCTTCAAAAGATTCAGGGCGTGGTATCTGGAGTGAGGAGGATGGTTGTGTATACAATTATGTCTTTTGCCCCTTCTGTTGCACTGACAACTGTATTGGTGTACAGATCATGGCGACTGATGCATCAAATATTCAATTACTTAATAAAGTGATGTTTTACTTGGAGTGTTTGGAGATCCAAGACCTAAAAGCCGATAAAGGAAAGGCTTCAGTAAACAAGGAATTGTCACCCGTTAGTAGCTCAGCCAAGAATAAGTTTGCCATCATGGAACCCATTGAAAACTTTTCGTACTCCCCTAGCCCTCTAGCCTCAGGCGGCTGGAGTTGCATCATGTACTATTTTCTAGCCATTTGGCTAGGTAATTCATCAGACGCAACTGCAGGTCTGTTTGAGTTCTACAACATCATTTGTGCAGTACTTGGTATACAATTCAACTTCTCAGGGAGACGAGTTAAATACAAGAAGGAAAACAACACTTTTGTACCAAAAAGTAACGTATTTATCAAATCCTTCAAAAATTGGTTTCAAGCAGTACAGTAA 3903 41.56 MVYAKAGTNPKSKSNPTYQVTKNVYPIGGIQVEFPFRPYGSQLAFMGRVISTLDRAQREGHCHALLESPTGTGKSLSLLCSSLAWQKNYKIKNQDGNSCHSKPAPEAVTDPLGFGGGFIPEVQPSSKFACLHPDHPIILNSRIRLSGLRREDIFRAIAYDDIGFLCASPATKHVHHLKRLTLSTLLWNADAGKLLFYMWFFVNLTSSDEYVALVSVDTESSLPVPNNKSQNKKTAPTIYYASRTHTQISQVIREYRKTTYRVPMAVLLVLVVRIPWLPASSPVSCGSAAMHFWVVLLSKLLLKDQDAGCCEFKNANKVKSHPTLQKGGCHEVHDIEDLVKVGEVIKGCSYYAARSMSDDAQLVFCPYSYIINPVIRGAMDVDIKGAIVILDEAHNIEDIARHAGSVDVEEDTLNSSWTGNHAQRELQEANITQQCFPILLECATKAIKAASDTESDDAHLSGLSVITLEGLFSSLTYFFSRNGCHMSDYQLALQRYVKRDPGKAYGDWTLTLSLWCLNPAVVFRDIGDLSLSVILTSGTLSPMNSFSSELGVQFGTSLEAPHVIDVEAQVWPAIISTGPGNYPLNGSYKTADGYAFQDALGKSLEEIFFIAPGGCLVFFPSYKLMEKLQNRWSETGQWSRLNARKSLFVEPRGGAQEDFDSILKGYYDTIRLGDNFAVGKKRRGKKVKPNHPYVVGCENPKEGAALLAVFRGKVSEGIDFSDDNARVVIIVGIPFPNINDIQVALKKKFNDTYKMSKNLLSGNEWYCQQAFRALNQAAGRCIRHKFDYGAIVLLDERFQEERNRTYISKWLRKSIKQFDNFEQSMKELKSFFSHIKALEDAKNCIIDLECSVETETRNPEFLSMNTVLEVPDSPIVQETPCVDIGGATSPGDSKGERSTSTIIEAYSEFPDQLSYHSLPLIKSTRSPLTSESSILHTPERNVAANAYSFARDTESSLNMSVNSHTQKRRKSIGLTIPKLAQEEFVADPKTKNPECNSLASSIISRNLTSPKDTSYEILLTEKKSKSSNVSQVLKLNDTVPVCLSSGLPMDKKLHLSCALCRSPLGRPENHLNVTCSFTVSSKTHLISKYKEMLKAQTANSPTSILLIITDILFVNQRVLVRSSKDSGRGIWSEEDGCVYNYVFCPFCCTDNCIGVQIMATDASNIQLLNKVMFYLECLEIQDLKADKGKASVNKELSPVSSSAKNKFAIMEPIENFSYSPSPLASGGWSCIMYYFLAIWLGNSSDATAGLFEFYNIICAVLGIQFNFSGRRVKYKKENNTFVPKSNVFIKSFKNWFQAVQ 1300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25355694 25366407 - Lsi04G018160.1 Lsi04g01816 661865

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01816 1300 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 350 793 IPR027417 -
Lsi04g01816 1300 Gene3D - 192 450 IPR027417 -
Lsi04g01816 1300 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. 28 443 IPR014013 GO:0005524
Lsi04g01816 1300 Pfam Helicase C-terminal domain 606 813 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Lsi04g01816 1300 SMART deadxpd 30 434 IPR006554 GO:0003678|GO:0016818
Lsi04g01816 1300 PANTHER DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER 17 1097 IPR045028 -
Lsi04g01816 1300 Gene3D - 581 830 IPR027417 -
Lsi04g01816 1300 Gene3D - 36 99 IPR027417 -
Lsi04g01816 1300 SMART Cxpdneu3 622 800 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Lsi04g01816 1300 CDD SF2_C_XPD 569 798 - -
Lsi04g01816 1300 PANTHER FANCONI ANEMIA GROUP J PROTEIN 17 1097 - -
Lsi04g01816 1300 Pfam DEAD_2 240 413 IPR010614 GO:0003677|GO:0003678|GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01816 K15362 BRIP1, BACH1, FANCJ; fanconi anemia group J protein [EC:5.6.2.3] - csv:101217839 1737.24
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02783 Lsi-Chr2:34067733 Lsi04g01816 Lsi-Chr4:25355694 1.09E-08 dispersed
Lsi02g02794 Lsi-Chr2:34167031 Lsi04g01816 Lsi-Chr4:25355694 2.94E-15 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g81 . Blo12g00850 . Bda03g00325 . Bpe04g00285 Bma04g00292 . . . . Cma09g00046 . . . Cpe06g00016 . . . . . . . . . . . . . . . Cone4ag2025 . . . Lsi04g01816 Csa04g02713 . . . . . . . . . . Sed13g2203 . Cmo09g00048 . . . Car09g00038 . . Bhi09g02869 Tan01g5121 Cmetu07g0880 . Hepe01g2348 Mch11g0049 . Cla11g01831 Cam11g1898 Cec11g1923 Cco11g1933 Clacu11g2062 Cmu11g1867 Cre11g2275 . . Chy07g00402 Cme07g00047
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007710 1 2 1 1 1 0 1 0 0 2 1 1 1 2 2 1 0 1 1 1 2 1 1 2 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01816 Lsi_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0