Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01817 ATGGCATTCGGCGCTTCCCGGCGTTTTCTTTCCCATCAATTCAGAGGGTGCTTTTTGGGACGTCTCGCCAGTGGCAGGTATCAATATTCCTTACTTTACTCGCCGTCGTCCTCATCGGCTTTATCATACTTGTTTTCAACCCTAGACGAACCATCAAATCTATTTGATGATGGTGTTTTGGGTGATGGAACTCGGAATCAATGTAGCATAGACGAGCGCTTCGTTATCGGCGAACTTTCTAATCTCTTACTTGTTAATCCCTATGGTTCGGTTTATAACACTCTCAAAGAGATTCCTACCGAGAAACAGATGCCAATTAGGGCAGTTGATGGATTTTTACCACCAGAAGAAAAATTGCGAGGTGTTTTCCTTCAAAAACTGAATGGTAAAACCGCAATCGAACATGCTTTAGCTAATACTGATGTGAATTTGAGCCAAGATGTTGTCAACAAAGTACTGGACACGGGGAGTTTAGGTAGCGAAGCAATGGTTACCTTCTTTTATTGGGCTATTAAACAGCCGTCGATACCTAAAGATACTTCCAGTTACAACATAATACTTAAAGCTTTAGGCAGAAGAAGGTTTTTTGACTCCATGATGGATGTTTTACACAACATGACACGGGAGGGAGTGAATGTGAACATGGAAACAGTATCCATTGTGGTAGACAGTTTGGTCAAGGCTCGCCAAGTTTCTAAGGCACTTCAGTTATTCAGAAACTTGAAAGAAATTGGGTTGAAATGTGATACTGAAACCTTGAATATTCTTCTACAATGCATGTGTCGACGATCCCATGTGGGTGCTGCAAACTCCTTCTTTAATTTAATCAAGGGGAATGTTCCTTTCAATGCTATGACATATAACATTATAATTGGTGGATGGTCAAGATACGGCAGGCATAGTGAAGTTGAGCGAATTTTGAAAGCAATGGAAGTTGATGGATTTTCTCCAGATTGTCTGACCTACACTTATCTTCTTGAGTGTCTTGGCAGAGCTAATCGCATTGATGATGCTGTCAAGGTCTTTGATAAAATGGATGAAAAAGGCTGTACGCCAGATGTTGATGCTTATAATGCAATGATCTCCAACTTTATATGTATAGGTGATTTTGATGAATGCCTGACCTATTACAAGCGTATGTTGAGTAATAGATGTGAACCTGACATCAACACCTATTCCAATTTGATCATTGGCTTTCTTAAAGCCAAGAAAGTGGCCGATGCACTAGAAATGTTTGATGAGATGGTGGCAAGAATAATTCCCACTACGGGGGCAATAACATCCTTTATGAAACTTAGCTGTAGTTATGGTCCTCCGCATGCAGCTATGTTAATCTACAAGAAAGCAAGAAAAGTTGGATGTAGGATATCCAAGAATGCTTACAAATTGTTGCTAATGCGGCTCTCTTTGTTTGGTAAATTTGGCATGCTATTAAATATATGGAATGAGATGCAAGAAAGTGGTTATGATCCTGATGTGGAAACTTATGAGCATGCCATCGACTGTCTTTGTAAAACAGGGCAGCTCGAAAATGCTGTACTCGTCATGGAGGAATGTTTACGTCAGGGTTTCTTCCCAAGTAGGCAAATACGTAGTAAGCTTAATAACAAACTATTGGCCTGTAATAGGACAGAGATGGCATATAAACTCTGGTTGAAAATCAAAGTTGCTCGTCATCAGGAAAGTTTGCAAAGATGTTGGCGTGCCAAGGGATGGCATTATTGA 1725 40.35 MAFGASRRFLSHQFRGCFLGRLASGRYQYSLLYSPSSSSALSYLFSTLDEPSNLFDDGVLGDGTRNQCSIDERFVIGELSNLLLVNPYGSVYNTLKEIPTEKQMPIRAVDGFLPPEEKLRGVFLQKLNGKTAIEHALANTDVNLSQDVVNKVLDTGSLGSEAMVTFFYWAIKQPSIPKDTSSYNIILKALGRRRFFDSMMDVLHNMTREGVNVNMETVSIVVDSLVKARQVSKALQLFRNLKEIGLKCDTETLNILLQCMCRRSHVGAANSFFNLIKGNVPFNAMTYNIIIGGWSRYGRHSEVERILKAMEVDGFSPDCLTYTYLLECLGRANRIDDAVKVFDKMDEKGCTPDVDAYNAMISNFICIGDFDECLTYYKRMLSNRCEPDINTYSNLIIGFLKAKKVADALEMFDEMVARIIPTTGAITSFMKLSCSYGPPHAAMLIYKKARKVGCRISKNAYKLLLMRLSLFGKFGMLLNIWNEMQESGYDPDVETYEHAIDCLCKTGQLENAVLVMEECLRQGFFPSRQIRSKLNNKLLACNRTEMAYKLWLKIKVARHQESLQRCWRAKGWHY 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25370242 25371966 + Lsi04G018170.1 Lsi04g01817 661866

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01817 574 Pfam Pentatricopeptide repeat domain 305 363 IPR002885 -
Lsi04g01817 574 Pfam PPR repeat 182 211 IPR002885 -
Lsi04g01817 574 Pfam PPR repeat 495 524 IPR002885 -
Lsi04g01817 574 Pfam PPR repeat 217 246 IPR002885 -
Lsi04g01817 574 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 388 422 IPR002885 -
Lsi04g01817 574 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 214 248 IPR002885 -
Lsi04g01817 574 TIGRFAM PPR: pentatricopeptide repeat domain 391 418 IPR002885 -
Lsi04g01817 574 TIGRFAM PPR: pentatricopeptide repeat domain 321 354 IPR002885 -
Lsi04g01817 574 TIGRFAM PPR: pentatricopeptide repeat domain 286 319 IPR002885 -
Lsi04g01817 574 TIGRFAM PPR: pentatricopeptide repeat domain 217 249 IPR002885 -
Lsi04g01817 574 TIGRFAM PPR: pentatricopeptide repeat domain 182 214 IPR002885 -
Lsi04g01817 574 TIGRFAM PPR: pentatricopeptide repeat domain 356 389 IPR002885 -
Lsi04g01817 574 Pfam PPR repeat 384 416 IPR002885 -
Lsi04g01817 574 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 318 352 IPR002885 -
Lsi04g01817 574 SUPERFAMILY TPR-like 318 416 IPR011990 GO:0005515
Lsi04g01817 574 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 179 213 IPR002885 -
Lsi04g01817 574 Gene3D Tetratricopeptide repeat domain 268 418 IPR011990 GO:0005515
Lsi04g01817 574 Gene3D Tetratricopeptide repeat domain 419 573 IPR011990 GO:0005515
Lsi04g01817 574 PANTHER OS02G0304800 PROTEIN 18 574 - -
Lsi04g01817 574 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 492 526 IPR002885 -
Lsi04g01817 574 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 283 317 IPR002885 -
Lsi04g01817 574 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 18 574 - -
Lsi04g01817 574 Gene3D Tetratricopeptide repeat domain 129 267 IPR011990 GO:0005515
Lsi04g01817 574 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 353 387 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01817 - - - csv:101204379 1028.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01817 Lsi-Chr4:25370242 Lsi11g00637 Lsi-Chr11:6714659 2.54E-53 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g80 . . . . . . . . . . . . . . . Cpe06g00015 . . . . . . . . . . . . . . . Cone4ag2026 . . . Lsi04g01817 Csa04g02714 . . . . . . . . . . . . Cmo09g00047 . . . Car09g00037 . . Bhi09g02856 . . . . . . . . . . . . . . . Chy07g00403 Cme07g00045
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006076 1 11 1 1 1 0 1 0 0 1 0 0 0 1 1 1 0 1 1 0 1 1 1 1 1 1 1 2 4 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01817 Lsi_Chr04 FPKM 1.147741 1.257095 1.738336 1.601523 0.905666 0.550905 0.426167 0.896227 0.760387 0.856347