Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01819 ATGGATCAGTTCGACGCATTCTTTATGAGAGCCGATTTGGATGGTGATGGAAGGATTAGTGGAGCTGAAGCCGTCGCTTTCTTTCAGGGCTCCAATTTGCCTAAAAATGTTCTTGCGCAGGTTGCGAATTCGAAATCCACAAATTGCTCGTTTATCACTTCATTACTTTGTTTCTCGGTAATAAAATTTGAGGCGACTGCGCCTCGTGGAAGAATATGGATGCATGCTGATCAGAGAAAAACAGGTTTCCTTGGTCGACCGGAATTTTATAATGCTCTCAGACTTGTGACTGTTGCTCAAAGTAAGCGAGAACTAACACCTGAAATTGTAAAGGCAGCACTATATGGTCCTGCTGCAGCGAAAATTCCCCCACCAAAGATTGATCTACAGGCTGTATCTGCCCCTCAATCAACTTCAGTGTCTGCTGCATCTCCTCCACAGATGAGTATACCTGCACCAATGGGATCTCAAAATTTTGGCTTTAGAGGACAAGGGGTTCCAAATGTGGGTGTGAATCAGCAGTATGTTTCAGCCCAGCCAAATCCTTCCATGAGGTTACCTCAAGCCACACCTGGTGGTCTACCTGGTGGTGTTGCTTCCAATACGCAACTGGTCATTGCTTCTGAACCCTCTGGAGGAGGAAACGTACTGGGTTCAAATCTTTCAAACCCAAATGATTGGCTCAGTGGAAGGCCAGGTGGCGGCCCTGCTGCTGGGCCTAGAGGAGTTAGCCCTTCCGTGCCTTCCCCAGCTACGTCGTTATCACCAGCTTTAGTGACTTCACAGCCTATGCCTAATGATAGAGCACCAGCTGTTACTGGTAATGGATTTGTTTCTAAGTCAGCATTTGGCGCTGACATGTTTTCTGTTACTCCATCTCCACCTAGACCAGAATCTTCTGGACTCAACAATGCAGCTAATAATAGTATTGGTCCATCAGCGATTGTTCCAGTTTCCAGTGTATCCCAACCTTTAAGTAAGCCCAACTCAATGGAGTCGTTACAGAGTGCATTTGTTTCAAGACCATTAGCTAGTTCACAGTTTCAGCTGTCTCAGTCATCACTGGAACCTAACAAGGAGGTTCGAGCAACAGGTCCATCGCCGCTTATATCTTCTGGGATCACAACTGGAGCCAGGAACTCTACTTCTGAAAATGCACAGTTTTGGCCAAAGATGAAATCAACTGATGTTCAGAAGTACACAAAAGTTTTTATGGAAGTAGACACCGACAGAGATGGTAGAATTACCGGCGAGCAGGCACGGAATCTATTTTTAAGTTGGAGGTTACCTAGAGAGGTCTTGAAGCAGGTGTGGGACTTATCTGATCAAGACAATGACAGCATGCTTTCTCTCAGAGAGTTTTGTTTTGCTTTATATCTAATGGAACGTTACAGGGAAGGACGACCTCTTCCAGCTGTGCTTCCAAATAATGTTATGTTTGATGAGACTCTGTTGTCCATGACAGGACAATCTAACATTGTCCATCCAAATGCAACTTGGGGTCCTCGTCCTGGATTTGGACAGCAGCAACCTCAGGTCACTGCTCGGTCAATGGCACCAACTGCAGGATTGAGACCCCCAACACCTGCTTCGAAGGCCGATGGTGCTAAACCATCCAATGAGCAGAAATCAAGGGCTCCAGTGTTGGAGGATTCATTTCTGGACCAGTCTGAGAAGGGCCAACAGAATTCGGCTAGCTTACATGCTCAAGATGCTACAGCGAACCTTTTTTTCAGCCTTTTACCTTATCGACGCACTGTCATGCAAGCTGTCGACTTGTATGATCATTATAATGTTCTACATAAAAGCAGATGTGATAATAGATTAAATGAGATCACAGAAAGGGCATCTGCTGACAAGCGTGAGGCAGAATCTTTGGGGAAAAAATATGAGGAGAAGTACAAGCAAGTGGCTGAAATAGCATCTAAGTTAACCATTGAAGAGGCAAAATACCGTGATGTTCAAGAAAGGAAGACAGAGTTGCATCAAGCAATTATTAAAATGGAACAAGGAGGAAGTGCTGATGGTATTCTTCAGGTCCGAGCTGATCGAATACAATCTGATATTGAGGAGCTCATAAAGGCTTTAACTGAACGTTGTAAGAAACATGGATTCGATGTTAAGTCGGCAGCTATAATCGAGCTTCCAGTAGGCTGGCAACCTGGAATTCCGGATGATGCAGCTATTTGGGATGAAGAGTGGGATAAATTTGAAGATGAAGGATTTTCCAATGATCTTAATCTCGATCCAAAAGGTGTTTCTGCCTCAAAACCAAAAATGTCAGACAGTGAAAAGGATCTAGCAGATTATAACTCAACTCCTGATTCATCGTCAAATGCCAATGGAAAAATGGGGAACTCCTTGAGTACCATCAATCGTGGGCTTGAGAGTGAATCTGTGTATAGCCACAGTGAAGATGAGTCGGCAAGAAGTCCATATGGCAGTCCAGCTGCTAAGACATCTCTAGAAAGCCCTTCTCATGAATTTTCAGATGCTGGTTATGAAAAAAGTCCGGAGTCATATAGAAGTTTCAATGAGTCTGCTTGGGGGGGCACCTTTGACAATAATGACGATGTGGACTCAGTTTGGGGAATAAAACCAGTTAATACCAAGGAGCCAGACTCTGAAAAGCACAGAGATTTCTTTGCCAGTGATTTTGATACTAGCTCCGTCAAAACAGGATCCCCGAATGCGGATAGCTTCTTTCAGAGAAAAAGCCCATTTTTTGAGGATTCTGTCCCTCCCACTCCCCTCTCTAGATTCGGCAACTCTTCCCCTCGCTATAGCGATGTGGGAGATCACTTCTTTGACAATTCCTCCAGGTTTGATTCTTCCAGCATGCAGGATGGCAGTTTTTCTCCGCAACGTGAGAAGTTCTCTAGGTTCGATTCAATAAGCAGTTCGCGTGATTTTGGCCATAATCAGGAAAAGTTCTCTAGGTTCGATTCAATAAGCAGTTCTCATGATTTTGGCCATAATCAAGAGAAGTTTTCAAGGTTTGATTCTATCAGCAGTAGCATGGACTTCGGCCAGAGTAGCCAGAGGCACGCCAGGTTTGACTCCATTGGCAGCTCCAGAGATTTCGGCCATGGCACCTTCTCTTTTGATGATGCAGATCCATTTGGTACCTCTGGCCCGTTTAAAGTCTCATCAGAGAGCCAGAGTCCGAAGAAAAGTTCCGATAGTTGGAGAGCTTTTTAA 3201 44.7 MDQFDAFFMRADLDGDGRISGAEAVAFFQGSNLPKNVLAQVANSKSTNCSFITSLLCFSVIKFEATAPRGRIWMHADQRKTGFLGRPEFYNALRLVTVAQSKRELTPEIVKAALYGPAAAKIPPPKIDLQAVSAPQSTSVSAASPPQMSIPAPMGSQNFGFRGQGVPNVGVNQQYVSAQPNPSMRLPQATPGGLPGGVASNTQLVIASEPSGGGNVLGSNLSNPNDWLSGRPGGGPAAGPRGVSPSVPSPATSLSPALVTSQPMPNDRAPAVTGNGFVSKSAFGADMFSVTPSPPRPESSGLNNAANNSIGPSAIVPVSSVSQPLSKPNSMESLQSAFVSRPLASSQFQLSQSSLEPNKEVRATGPSPLISSGITTGARNSTSENAQFWPKMKSTDVQKYTKVFMEVDTDRDGRITGEQARNLFLSWRLPREVLKQVWDLSDQDNDSMLSLREFCFALYLMERYREGRPLPAVLPNNVMFDETLLSMTGQSNIVHPNATWGPRPGFGQQQPQVTARSMAPTAGLRPPTPASKADGAKPSNEQKSRAPVLEDSFLDQSEKGQQNSASLHAQDATANLFFSLLPYRRTVMQAVDLYDHYNVLHKSRCDNRLNEITERASADKREAESLGKKYEEKYKQVAEIASKLTIEEAKYRDVQERKTELHQAIIKMEQGGSADGILQVRADRIQSDIEELIKALTERCKKHGFDVKSAAIIELPVGWQPGIPDDAAIWDEEWDKFEDEGFSNDLNLDPKGVSASKPKMSDSEKDLADYNSTPDSSSNANGKMGNSLSTINRGLESESVYSHSEDESARSPYGSPAAKTSLESPSHEFSDAGYEKSPESYRSFNESAWGGTFDNNDDVDSVWGIKPVNTKEPDSEKHRDFFASDFDTSSVKTGSPNADSFFQRKSPFFEDSVPPTPLSRFGNSSPRYSDVGDHFFDNSSRFDSSSMQDGSFSPQREKFSRFDSISSSRDFGHNQEKFSRFDSISSSHDFGHNQEKFSRFDSISSSMDFGQSSQRHARFDSIGSSRDFGHGTFSFDDADPFGTSGPFKVSSESQSPKKSSDSWRAF 1066
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25374676 25388674 + Lsi04G018190.1 Lsi04g01819 661868

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01819 1066 SMART efh_1 3 31 IPR002048 GO:0005509
Lsi04g01819 1066 SMART efh_1 433 461 IPR002048 GO:0005509
Lsi04g01819 1066 SMART efh_1 399 427 IPR002048 GO:0005509
Lsi04g01819 1066 CDD EH 4 101 IPR000261 GO:0005515
Lsi04g01819 1066 SUPERFAMILY EF-hand 386 479 IPR011992 -
Lsi04g01819 1066 MobiDBLite consensus disorder prediction 1044 1066 - -
Lsi04g01819 1066 ProSiteProfiles EH domain profile. 396 479 IPR000261 GO:0005515
Lsi04g01819 1066 MobiDBLite consensus disorder prediction 940 972 - -
Lsi04g01819 1066 PANTHER EH DOMAIN 71 982 - -
Lsi04g01819 1066 PANTHER EH DOMAIN 1 43 - -
Lsi04g01819 1066 Gene3D - 391 479 - -
Lsi04g01819 1066 MobiDBLite consensus disorder prediction 1046 1066 - -
Lsi04g01819 1066 Pfam Cytoskeletal-regulatory complex EF hand 390 461 IPR000261 GO:0005515
Lsi04g01819 1066 MobiDBLite consensus disorder prediction 740 876 - -
Lsi04g01819 1066 MobiDBLite consensus disorder prediction 246 263 - -
Lsi04g01819 1066 MobiDBLite consensus disorder prediction 207 227 - -
Lsi04g01819 1066 ProSiteProfiles EF-hand calcium-binding domain profile. 1 34 IPR002048 GO:0005509
Lsi04g01819 1066 ProSiteProfiles EF-hand calcium-binding domain profile. 395 430 IPR002048 GO:0005509
Lsi04g01819 1066 MobiDBLite consensus disorder prediction 495 517 - -
Lsi04g01819 1066 MobiDBLite consensus disorder prediction 840 854 - -
Lsi04g01819 1066 MobiDBLite consensus disorder prediction 207 263 - -
Lsi04g01819 1066 Gene3D - 1 127 - -
Lsi04g01819 1066 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 1 43 - -
Lsi04g01819 1066 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 71 982 - -
Lsi04g01819 1066 Pfam EF hand 5 21 IPR002048 GO:0005509
Lsi04g01819 1066 SMART eh_3 389 484 IPR000261 GO:0005515
Lsi04g01819 1066 SMART eh_3 2 119 IPR000261 GO:0005515
Lsi04g01819 1066 MobiDBLite consensus disorder prediction 806 827 - -
Lsi04g01819 1066 MobiDBLite consensus disorder prediction 495 547 - -
Lsi04g01819 1066 MobiDBLite consensus disorder prediction 349 381 - -
Lsi04g01819 1066 MobiDBLite consensus disorder prediction 770 798 - -
Lsi04g01819 1066 PANTHER EH DOMAIN 989 1066 - -
Lsi04g01819 1066 SUPERFAMILY EF-hand 2 110 IPR011992 -
Lsi04g01819 1066 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 989 1066 - -
Lsi04g01819 1066 CDD EH 400 466 IPR000261 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01819 K12472 EPS15; epidermal growth factor receptor substrate 15 - csv:101204624 1746.87
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01819 Lsi-Chr4:25374676 Lsi05g00569 Lsi-Chr5:7044925 4.78E-06 dispersed
Lsi11g01287 Lsi-Chr11:21498193 Lsi04g01819 Lsi-Chr4:25374676 1.44E-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g78 . . . . . . . . . . Cma01g02025 Cma09g00044 Car01g01591 . . Cpe06g00014 . . . . . . . . . . . . . . . . . Cone17ag1459 Cone20ag0016 Lsi04g01819 Csa04g02715 . . . . . . . . . . . . Cmo09g00045 . . . Car09g00036 . Cpe02g00029 Bhi09g02853 Tan01g5126 Cmetu07g1818 . Hepe01g2350 Mch11g0047 . Cla11g01832 Cam11g1899 Cec11g1925 Cco11g1934 Clacu11g2063 Cmu11g1868 Cre11g2276 . . Chy07g00404 Cme07g00044
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005327 2 2 2 4 1 0 2 0 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 0 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01819 Lsi_Chr04 FPKM 24.593119 24.83812 22.793257 23.714849 13.23869 12.078263 14.506036 21.657673 20.314087 23.056261