Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01821 ATGACGATGAAATCCAATGCGTGGGTTCTATTGTTATTAGTGATCTACTCCGGCGTCGTCAATTGCATTGATGACAAATGCGCCGCTTGCAATGCTGTTGCCGAGGAGATAGAACATGGACTTTCCAATGAAAAACCGAGGAATCATTTAGATATGAGACATCGGTTGGATTCTAAAGGTCAGCGTAAGGGGAAGGTGATTGATTACAGGGTCAGTGAGCTTAGAGTTGTCGAACTCCTGGATGGGCTTTGTGAAAAGATGCAAGATTACACTATTGAGAAGACAGGTTCAACTGGACAACAGTGGATCAAGGTGGATAACTGGGACAACCTGACAAATAAACAAGAAGCTCGGGCTTATTCTAAAGATATATCAACTTATTGTGGGAGATTATTGGAGGAAACAGAAGATGATTTGGCAGAGTTGATTAAGAAAGGATCTGTCATGGCAGGTGATGTTAGCAAAGTCCTATGCCATGATTTGAGCAGGCATTGCAGCAAGGCGAGCAGTGTTCAGCTGAATGACGAGGACGACGAAGCAGATGGAGAACTATGA 555 43.6 MTMKSNAWVLLLLVIYSGVVNCIDDKCAACNAVAEEIEHGLSNEKPRNHLDMRHRLDSKGQRKGKVIDYRVSELRVVELLDGLCEKMQDYTIEKTGSTGQQWIKVDNWDNLTNKQEARAYSKDISTYCGRLLEETEDDLAELIKKGSVMAGDVSKVLCHDLSRHCSKASSVQLNDEDDEADGEL 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25392116 25397485 + Lsi04G018210.1 Lsi04g01821 661870

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01821 184 PANTHER OS02G0117200 PROTEIN 5 177 - -
Lsi04g01821 184 PANTHER OS02G0117200 PROTEIN 5 177 - -
Lsi04g01821 184 Pfam TLR4 regulator and MIR-interacting MSAP 26 165 IPR021852 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01821 K22936 CNPY1_2; protein canopy 1/2 - csv:101206302 342.428
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g73 Blo01g01640 Blo12g00849 . Bda03g00326 . Bpe04g00286 Bma04g00293 . . . . Cma09g00043 Car01g01593 . . Cpe06g00013 . . . . . . . . . . . . . . . Cone4ag2027 . . . Lsi04g01821 Csa04g02718 . . . . Bda11g00978 . . . . . . Cmo01g02081 Cmo09g00043 . . . Car09g00034 . Cpe02g00027 Bhi09g02848 . . . . Mch11g0045 . Cla11g01834 Cam11g1901 Cec11g1927 Cco11g1936 Clacu11g2065 Cmu11g1870 Cre11g2278 . . Chy07g00406 Cme07g00042
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006313 2 4 2 1 1 0 2 0 0 1 1 1 1 1 1 2 0 1 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01821 Lsi_Chr04 FPKM 4.017609 4.433161 0.92866 0.739603 7.349307 9.204436 7.502664 2.376262 1.806501 1.934927