Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01822 ATGAGGCGAAACGGGATCGCCGAAAAGCGGAGGAGAATCACTTACTATCTTAGCCGCAACCTGCTACATCTAGTTGGCTCCAATGAGAGATTGCCACACCCTGGCCGATACTGCTCGAACTTGCAATTATTAAGAACTTTTGATAGAAATATGGCTACGGGTATAGATTTTTCACCTCCCTTCACTCTACTGGAAGGCGGCGGATACAATAAGGACAATGTATCAGCCACAGATGACGAAAGTTCTGATAGCTTTAATAGTTTGAAACAGATGAGCAGTGGGAAGCCTCCCCGACACCTCTCAGTAATGCGACATAGTGTGAGCTCCATAAAGCTCCTTGGCCAAGCTGATTTAGGCTTGGATGCTGAAACTCTTGAGAATAAGTCACCTGATGGAAAAGCAGGATTCTTACCTGTCTTTAGATCGGGCAGCTGTTCAGAAAGGGGACCTAAACAGTACATGGAAGACGAGCACATATGCATAGATGATCTTGTTGAACATATCCATGCTTGTGCAGATTTCACTTCTCCTGGAGCTTTCTATGGTGTATTTGATGGCCATGGAGGTACAGACGCTGCTGCTTTTGTTAGAAAGAACATCCTCAGATTCATAGTCGAGGACTCCTGTTTTCCAATTAGTGTGGAGAAGGCAATTAAGAGTGCTTTTTTGAAAGCTGATTACGCATTTGCTGATGCTAGTTCTCTGGATATCTCCTCTGGCACAACTGCCCTAACTGCTTTCATTTTTGGAAGAACAATGATTATTGCGAATGCTGGGGATTGTCGAGCTGTTCTGGGGCGGAGGGGGAAGGCTATTGAGGTGTCGAAGGATCACAAGCCCAACTGTGCATCTGAAAAGCTCAGAATTGAGAAGCTGGGTGGGGTAATCTATGATGGGTACCTCAATGGGCAGTTATCTGTTGCACGTGCTATAGGAGATTGGCACATGAAAGGTGCTAAGGGTTCTGCATGCCCACTGAGTGCCGAGCCAGAGCTGGAGGAACTGAATTTGACGGAGGAAGATGAATTTCTAATAATGGGATGCGATGGGCTATGGGATGTGATGAGCAGTCAGTATGCTGTTACAATGGCAAGGAAAGAGCTGATGCTACATAATGATCCTGAAAGGTGTTCAAGAGAGCTGGTAAGGGAAGCGCTAAAGCGTAATACATGCGATAATTTAACTGTTATTGTGGTCTGTTTTTCGGCTGATCCGCCCCCTCGAATAGAAATTCCTCCAACTCGAGTAAGGAGAAGCATATCATTAGAAGGGCTGAATTTGTTGAAAGGTGTATTGGACTGCAATTCTTGA 1311 45.31 MRRNGIAEKRRRITYYLSRNLLHLVGSNERLPHPGRYCSNLQLLRTFDRNMATGIDFSPPFTLLEGGGYNKDNVSATDDESSDSFNSLKQMSSGKPPRHLSVMRHSVSSIKLLGQADLGLDAETLENKSPDGKAGFLPVFRSGSCSERGPKQYMEDEHICIDDLVEHIHACADFTSPGAFYGVFDGHGGTDAAAFVRKNILRFIVEDSCFPISVEKAIKSAFLKADYAFADASSLDISSGTTALTAFIFGRTMIIANAGDCRAVLGRRGKAIEVSKDHKPNCASEKLRIEKLGGVIYDGYLNGQLSVARAIGDWHMKGAKGSACPLSAEPELEELNLTEEDEFLIMGCDGLWDVMSSQYAVTMARKELMLHNDPERCSRELVREALKRNTCDNLTVIVVCFSADPPPRIEIPPTRVRRSISLEGLNLLKGVLDCNS 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25398019 25402899 - Lsi04G018220.1 Lsi04g01822 661871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01822 436 Gene3D - 122 404 IPR036457 -
Lsi04g01822 436 MobiDBLite consensus disorder prediction 72 100 - -
Lsi04g01822 436 SMART PP2C_4 131 399 IPR001932 -
Lsi04g01822 436 SUPERFAMILY PP2C-like 135 402 IPR036457 -
Lsi04g01822 436 PANTHER PROTEIN PHOSPHATASE 2C 51 423 IPR015655 GO:0004722|GO:0006470
Lsi04g01822 436 CDD PP2Cc 140 401 IPR001932 -
Lsi04g01822 436 MobiDBLite consensus disorder prediction 79 94 - -
Lsi04g01822 436 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 51 423 - -
Lsi04g01822 436 Pfam Protein phosphatase 2C 142 393 IPR001932 -
Lsi04g01822 436 ProSiteProfiles PPM-type phosphatase domain profile. 141 401 IPR001932 -
Lsi04g01822 436 ProSitePatterns PPM-type phosphatase domain signature. 180 188 IPR000222 GO:0043169
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01822 Lsi-Chr4:25398019 Lsi11g00389 Lsi-Chr11:4007795 4.02E-109 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01822 K14803 - csv:101205355 753.051