Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01823 ATGATGAATTCAGAGGCCCACCTACAAGACAATGTATTACAATTTTATGAGGAGAACACAATTAGCACTCTTGGCCGCCTAGTGCTGATCATATGGCTCTTCGTGGTTTTGATAGTTAATTATAGCTACACTGCCAGTTTAACATCCATTCTCACCGTGCAACAACTATATTCTCCCATCACAGGAATCGAAACCTTGAGGGAAGGTGGTGAACCGATAGGTTTCCAAGTTGGATCGTTTGCTGAACGTTATCTTAGGGAGGAGCTGAACATATCTAGATCTAGGCTTATTCCTCTTGGATCACCCGAAGAATATGCCAAGGCACTTGTGCTTGGCCCTGACAAGGAGGGGGGTGTTGCTACTATAGTTGACGAACTTCTATATGTAGAAAGTTTTCTCTCGAGACAGTGTTCATTCAGAGTTGTTGGTCAAGAGTTCACAAAAAGTGGTTGGGGTTTCATGAGTGTCGATTCTTTCTAG 480 43.12 MMNSEAHLQDNVLQFYEENTISTLGRLVLIIWLFVVLIVNYSYTASLTSILTVQQLYSPITGIETLREGGEPIGFQVGSFAERYLREELNISRSRLIPLGSPEEYAKALVLGPDKEGGVATIVDELLYVESFLSRQCSFRVVGQEFTKSGWGFMSVDSF 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25408210 25411405 + Lsi04G018230.1 Lsi04g01823 661872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01823 159 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 16 154 - -
Lsi04g01823 159 PANTHER GLUTAMATE RECEPTOR 3.3 16 154 - -
Lsi04g01823 159 Gene3D - 9 91 - -
Lsi04g01823 159 SUPERFAMILY Periplasmic binding protein-like II 42 154 - -
Lsi04g01823 159 Pfam Ligand-gated ion channel 16 69 IPR001320 GO:0015276|GO:0016020
Lsi04g01823 159 SMART GluR_14 9 158 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01823 Lsi-Chr4:25408210 Lsi10g00140 Lsi-Chr10:2214247 2.95E-51 dispersed
Lsi04g01823 Lsi-Chr4:25408210 Lsi04g01826 Lsi-Chr4:25427138 7.49E-87 proximal
Lsi01g00527 Lsi-Chr1:4324354 Lsi04g01823 Lsi-Chr4:25408210 4.22E-54 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01823 K05387 - csv:101204862 247.669