Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01826 ATGAGTTTCCTTTGGTTTATTTCATTGTTATCTCTCTGTTGTGGTATTTTTCCTCTTGGATTTGGTAAAAACATTTCGACAAGACCATCGGTTGTGAACATTGGAGCTATTTTATCTTTTAATTCTACCATTGGAAAAGTTGCTATGATTGCCATTGAAGAAGCTGTAAAAGATGTGAATGCGGATCCCAGCATTCTTCCTGGAACCAACCTTTGGTTACAAAAGCAAAATTCCAACTGTAGTGGGTTTCTGGGCATGGTCGAAGGGCTCTTTCTAATCCAGCCTAGAACTAACGATGAATTTGTTGTAGTTTTGCAACTTATGGAGAATGAAACCGTTGCCATCATAGGCCCCCAATCTTCTGTGGTTGCCCACATTTCATCCCAAGTTGCAACCGAGTTCCAAGTCCCTCTAGTCTCATTTTCAGCTACTGATCCTACTCTCTCTGCCCTTCAATTTCCTTTTTTTGTGAGGGCTGCACAGAGTGATTTGTTTCAGATGACTGCGGTTGCTGAGATTGTTGAGAAATATAATTGGAAAGAGGTCATTGCTATATATGTTGATGATGATTATGGGTGGAACGGAATTGCGACATTGGGTGATAAACTTGCTGAAAGGCGTTGTAAAATCACATATAAGGTGGGTATTAGTCCAGATTCTGTGGACAATCGAGCCCGAGTTATGGATCAACTTGTTAAAGTTGCACTGATGGAATCAAGAGTTATGGTTCTCCATGTGAACCCTAAATTAGGCACCTTAGTCTTTTCAGTGGCCAAGTACCTTCAAATGATGGGCAATGGATATGTATGGATAGCAACTGATTGGCTTTCGTCTCTATTGGACAGTGTTGTTCCTCCCCCTCTTGAGATCATGGAGTCGATGCAAGGAGTTCTTTCTCTACGGCAGCACACAGCAGAGTCAGATAAAAAGAGAGCTTTTCTTTCCAGGTGGAATAAGTTAACGGGTGGCTCTTTAGGTCTGAATGCTTATGGTCTGTATGCTTATGACTCTGTTTGGGTGGTTGCTCATGCCATCGACAAATTTTTCAATCAAGGTGGGGTCGTCACACACTCTAATGACTCCAAGCTGCATTTCAGTGAAAGCGGTGATCTTCATCTTGAAGCTATGACTATCTTTGATGGTGGAAACCGCTTGCTGAACAACATATTGGAGAGTGATTTTGTTGGTCTGACTGGTGCCATTAAGTTCGATTCGGACAGATCCCTTCTTCATCCTGCATATGACATTATTAATATTATTGGGACTGGATCAAGAAGGGTGGGTTATTGGTCCAACTATTCTGGTTTATCAATTGATGCTCCTGAGACACTCTATTCCAAACCACCTAATCGTTCACATGCAAATCAGAAGCTGTATGAGGTGATATGGCCAGGAAATACAATAGAACAGCCTCGAGGATGGGTATTCCCGAACAATGGGAAGCTATTAAAAATTGGAGTGCCACTTCGGGTCAGTTATAAGGAGTTTGTATCAAAAATCAAAGGGACCGAAAATTTTCAGGGTTTCTGCATTGATGTGTTTACAGCTGCTGTAGACTTATTGCCGTATGCTGTCCCGCGCCAATTTATAGCCTTCGGCGATGGCCATCACAATCCAAATTACACAGATCTTGTGCATGGGATTACAACTGGCAAATTTGATGCTGTTGTTGGAGACATAGCAATTGTCACAAGCCGTACAAGGCTTGTAGATTTTACTCTGCCATATACTGCTTCTGGACTAGTTGTTGTGGCCCCATTCAAAAAACTGAACACTGGGGCTTGGGCTTTCCTGCATCCATTTTCTCCAGCCATGTGGATGGTTACAGCTAGTTTCTTCCTTTTTATCGGAATAAGCATAGGACGAATGATGAATTCAGAGGCCCACCTAGAAGACAATGTATTACAATTTTATGGTGAGGTCCTTTATCTGAGATCTTCTAGCACAATTTGTCCTATTATAAACATATTTCAGTTTGTCACTTACACACTGAAGAATGGGCAAAGATCTCCCTTTGATTTGGAGAGTTGCTTAAAGACAGTTTTCATGAAAGATATGGTGAGTTTGGAGCTTAAATTGACATTAGCGAAAGAGGAGAACACAATTAGCACTCTTGGCCGCCTAGTGCTGATCATATGGCTCTTCGTGGTTTTGATAGTTAATTCTAGCTACACTGCCAGTTTAACATCCATTCTCACCGTGCAACAACTATATTCTCCCATCACAGGAATCGAAACCTTGAGGGAAGGTGGTGAACCGATAGGTTTCCAAGTTGGATCGTTTGCTGAACGTTATCTTAGGGAGGAGCTGAACATATCTAGATCTAGGCTTATTCCTCTTGGATCACCCGAAGAATATGCCAAGGCACTTGTGCTTGGCCCTGACAAGGAGGGGGGTGTTGCTGCTATAGTTGACGAACTTCTATATGTAGAAAGTTTTCTCTCGAGACAGTGTTCATTCAGAGTTGTTGGTCAAGAGTTCACAAAAAGTGGTTGGGGTTTCGCATTCCCCCGAGATTCTCCCTTGGCCATAGACTTGTCAACGGCCATTTTGCAGCTCTCTGAGAATGGTGATCTTCAACGGATACATGACAAATGGCTAGTGAAAAGTGCTTGCACCATGGACAATGCGGAGCTAGAATCAGACCGGCTTCAACTTAAGAGCTTCTGGGGTCTTTTTCTAATTTGTGGGATAGCTTGTTTCATTGCCCTTGCCATATATTGTTTTCAGATTATTCGTCAGCTATACCGTACTGATGCAAAAGAATCTGATCTGTCTAACAGTAGTGGATCACATTCTAACCGCCTTCGAAGAATTATGTCATTATTGGATGAGAAGAAAGAACCTTCTAAAAGGGGAAGCAAACGAAGGAAAGTTGAGAAATCATCTGAAAATGATAAGAACGTTGATCATTTGGAGGGAGATCCCTAA 2931 42.07 MSFLWFISLLSLCCGIFPLGFGKNISTRPSVVNIGAILSFNSTIGKVAMIAIEEAVKDVNADPSILPGTNLWLQKQNSNCSGFLGMVEGLFLIQPRTNDEFVVVLQLMENETVAIIGPQSSVVAHISSQVATEFQVPLVSFSATDPTLSALQFPFFVRAAQSDLFQMTAVAEIVEKYNWKEVIAIYVDDDYGWNGIATLGDKLAERRCKITYKVGISPDSVDNRARVMDQLVKVALMESRVMVLHVNPKLGTLVFSVAKYLQMMGNGYVWIATDWLSSLLDSVVPPPLEIMESMQGVLSLRQHTAESDKKRAFLSRWNKLTGGSLGLNAYGLYAYDSVWVVAHAIDKFFNQGGVVTHSNDSKLHFSESGDLHLEAMTIFDGGNRLLNNILESDFVGLTGAIKFDSDRSLLHPAYDIINIIGTGSRRVGYWSNYSGLSIDAPETLYSKPPNRSHANQKLYEVIWPGNTIEQPRGWVFPNNGKLLKIGVPLRVSYKEFVSKIKGTENFQGFCIDVFTAAVDLLPYAVPRQFIAFGDGHHNPNYTDLVHGITTGKFDAVVGDIAIVTSRTRLVDFTLPYTASGLVVVAPFKKLNTGAWAFLHPFSPAMWMVTASFFLFIGISIGRMMNSEAHLEDNVLQFYGEVLYLRSSSTICPIINIFQFVTYTLKNGQRSPFDLESCLKTVFMKDMVSLELKLTLAKEENTISTLGRLVLIIWLFVVLIVNSSYTASLTSILTVQQLYSPITGIETLREGGEPIGFQVGSFAERYLREELNISRSRLIPLGSPEEYAKALVLGPDKEGGVAAIVDELLYVESFLSRQCSFRVVGQEFTKSGWGFAFPRDSPLAIDLSTAILQLSENGDLQRIHDKWLVKSACTMDNAELESDRLQLKSFWGLFLICGIACFIALAIYCFQIIRQLYRTDAKESDLSNSSGSHSNRLRRIMSLLDEKKEPSKRGSKRRKVEKSSENDKNVDHLEGDP 976
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25427138 25430822 + Lsi04G018260.1 Lsi04g01826 661875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01826 976 MobiDBLite consensus disorder prediction 942 976 - -
Lsi04g01826 976 SMART GluR_14 484 869 IPR001320 GO:0015276|GO:0016020
Lsi04g01826 976 Pfam Receptor family ligand binding region 49 420 IPR001828 -
Lsi04g01826 976 SUPERFAMILY Periplasmic binding protein-like II 461 869 - -
Lsi04g01826 976 Pfam Bacterial extracellular solute-binding proteins, family 3 501 868 IPR001638 -
Lsi04g01826 976 PIRSF IGluLR_plant 680 974 IPR017103 -
Lsi04g01826 976 PIRSF IGluLR_plant 1 629 IPR017103 -
Lsi04g01826 976 Pfam Ligand-gated ion channel 869 900 IPR001320 GO:0015276|GO:0016020
Lsi04g01826 976 Gene3D - 50 411 - -
Lsi04g01826 976 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 693 972 - -
Lsi04g01826 976 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 11 620 - -
Lsi04g01826 976 Gene3D - 162 436 - -
Lsi04g01826 976 SUPERFAMILY Periplasmic binding protein-like I 28 475 IPR028082 -
Lsi04g01826 976 CDD PBP1_GABAb_receptor_plant 33 437 IPR044440 -
Lsi04g01826 976 PRINTS Metabotropic glutamate GPCR signature 182 199 IPR000337 GO:0004930|GO:0007186|GO:0016021
Lsi04g01826 976 PRINTS Metabotropic glutamate GPCR signature 115 141 IPR000337 GO:0004930|GO:0007186|GO:0016021
Lsi04g01826 976 PRINTS Metabotropic glutamate GPCR signature 147 166 IPR000337 GO:0004930|GO:0007186|GO:0016021
Lsi04g01826 976 PRINTS Metabotropic glutamate GPCR signature 60 79 IPR000337 GO:0004930|GO:0007186|GO:0016021
Lsi04g01826 976 PRINTS Metabotropic glutamate GPCR signature 166 182 IPR000337 GO:0004930|GO:0007186|GO:0016021
Lsi04g01826 976 PANTHER GLUTAMATE RECEPTOR 3.3 693 972 - -
Lsi04g01826 976 PANTHER GLUTAMATE RECEPTOR 3.3 11 620 - -
Lsi04g01826 976 Gene3D - 833 866 - -
Lsi04g01826 976 Gene3D - 593 754 - -
Lsi04g01826 976 Gene3D - 797 832 - -
Lsi04g01826 976 CDD GluR_Plant 481 867 - -
Lsi04g01826 976 Gene3D - 489 592 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00527 Lsi-Chr1:4324354 Lsi04g01826 Lsi-Chr4:25427138 0 dispersed
Lsi04g01826 Lsi-Chr4:25427138 Lsi10g00140 Lsi-Chr10:2214247 0 dispersed
Lsi04g01823 Lsi-Chr4:25408210 Lsi04g01826 Lsi-Chr4:25427138 7.49E-87 proximal
Lsi11g01292 Lsi-Chr11:21564679 Lsi04g01826 Lsi-Chr4:25427138 1.25E-173 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01826 K05387 - csv:101204862 1607.81