Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi04g01826 | ATGAGTTTCCTTTGGTTTATTTCATTGTTATCTCTCTGTTGTGGTATTTTTCCTCTTGGATTTGGTAAAAACATTTCGACAAGACCATCGGTTGTGAACATTGGAGCTATTTTATCTTTTAATTCTACCATTGGAAAAGTTGCTATGATTGCCATTGAAGAAGCTGTAAAAGATGTGAATGCGGATCCCAGCATTCTTCCTGGAACCAACCTTTGGTTACAAAAGCAAAATTCCAACTGTAGTGGGTTTCTGGGCATGGTCGAAGGGCTCTTTCTAATCCAGCCTAGAACTAACGATGAATTTGTTGTAGTTTTGCAACTTATGGAGAATGAAACCGTTGCCATCATAGGCCCCCAATCTTCTGTGGTTGCCCACATTTCATCCCAAGTTGCAACCGAGTTCCAAGTCCCTCTAGTCTCATTTTCAGCTACTGATCCTACTCTCTCTGCCCTTCAATTTCCTTTTTTTGTGAGGGCTGCACAGAGTGATTTGTTTCAGATGACTGCGGTTGCTGAGATTGTTGAGAAATATAATTGGAAAGAGGTCATTGCTATATATGTTGATGATGATTATGGGTGGAACGGAATTGCGACATTGGGTGATAAACTTGCTGAAAGGCGTTGTAAAATCACATATAAGGTGGGTATTAGTCCAGATTCTGTGGACAATCGAGCCCGAGTTATGGATCAACTTGTTAAAGTTGCACTGATGGAATCAAGAGTTATGGTTCTCCATGTGAACCCTAAATTAGGCACCTTAGTCTTTTCAGTGGCCAAGTACCTTCAAATGATGGGCAATGGATATGTATGGATAGCAACTGATTGGCTTTCGTCTCTATTGGACAGTGTTGTTCCTCCCCCTCTTGAGATCATGGAGTCGATGCAAGGAGTTCTTTCTCTACGGCAGCACACAGCAGAGTCAGATAAAAAGAGAGCTTTTCTTTCCAGGTGGAATAAGTTAACGGGTGGCTCTTTAGGTCTGAATGCTTATGGTCTGTATGCTTATGACTCTGTTTGGGTGGTTGCTCATGCCATCGACAAATTTTTCAATCAAGGTGGGGTCGTCACACACTCTAATGACTCCAAGCTGCATTTCAGTGAAAGCGGTGATCTTCATCTTGAAGCTATGACTATCTTTGATGGTGGAAACCGCTTGCTGAACAACATATTGGAGAGTGATTTTGTTGGTCTGACTGGTGCCATTAAGTTCGATTCGGACAGATCCCTTCTTCATCCTGCATATGACATTATTAATATTATTGGGACTGGATCAAGAAGGGTGGGTTATTGGTCCAACTATTCTGGTTTATCAATTGATGCTCCTGAGACACTCTATTCCAAACCACCTAATCGTTCACATGCAAATCAGAAGCTGTATGAGGTGATATGGCCAGGAAATACAATAGAACAGCCTCGAGGATGGGTATTCCCGAACAATGGGAAGCTATTAAAAATTGGAGTGCCACTTCGGGTCAGTTATAAGGAGTTTGTATCAAAAATCAAAGGGACCGAAAATTTTCAGGGTTTCTGCATTGATGTGTTTACAGCTGCTGTAGACTTATTGCCGTATGCTGTCCCGCGCCAATTTATAGCCTTCGGCGATGGCCATCACAATCCAAATTACACAGATCTTGTGCATGGGATTACAACTGGCAAATTTGATGCTGTTGTTGGAGACATAGCAATTGTCACAAGCCGTACAAGGCTTGTAGATTTTACTCTGCCATATACTGCTTCTGGACTAGTTGTTGTGGCCCCATTCAAAAAACTGAACACTGGGGCTTGGGCTTTCCTGCATCCATTTTCTCCAGCCATGTGGATGGTTACAGCTAGTTTCTTCCTTTTTATCGGAATAAGCATAGGACGAATGATGAATTCAGAGGCCCACCTAGAAGACAATGTATTACAATTTTATGGTGAGGTCCTTTATCTGAGATCTTCTAGCACAATTTGTCCTATTATAAACATATTTCAGTTTGTCACTTACACACTGAAGAATGGGCAAAGATCTCCCTTTGATTTGGAGAGTTGCTTAAAGACAGTTTTCATGAAAGATATGGTGAGTTTGGAGCTTAAATTGACATTAGCGAAAGAGGAGAACACAATTAGCACTCTTGGCCGCCTAGTGCTGATCATATGGCTCTTCGTGGTTTTGATAGTTAATTCTAGCTACACTGCCAGTTTAACATCCATTCTCACCGTGCAACAACTATATTCTCCCATCACAGGAATCGAAACCTTGAGGGAAGGTGGTGAACCGATAGGTTTCCAAGTTGGATCGTTTGCTGAACGTTATCTTAGGGAGGAGCTGAACATATCTAGATCTAGGCTTATTCCTCTTGGATCACCCGAAGAATATGCCAAGGCACTTGTGCTTGGCCCTGACAAGGAGGGGGGTGTTGCTGCTATAGTTGACGAACTTCTATATGTAGAAAGTTTTCTCTCGAGACAGTGTTCATTCAGAGTTGTTGGTCAAGAGTTCACAAAAAGTGGTTGGGGTTTCGCATTCCCCCGAGATTCTCCCTTGGCCATAGACTTGTCAACGGCCATTTTGCAGCTCTCTGAGAATGGTGATCTTCAACGGATACATGACAAATGGCTAGTGAAAAGTGCTTGCACCATGGACAATGCGGAGCTAGAATCAGACCGGCTTCAACTTAAGAGCTTCTGGGGTCTTTTTCTAATTTGTGGGATAGCTTGTTTCATTGCCCTTGCCATATATTGTTTTCAGATTATTCGTCAGCTATACCGTACTGATGCAAAAGAATCTGATCTGTCTAACAGTAGTGGATCACATTCTAACCGCCTTCGAAGAATTATGTCATTATTGGATGAGAAGAAAGAACCTTCTAAAAGGGGAAGCAAACGAAGGAAAGTTGAGAAATCATCTGAAAATGATAAGAACGTTGATCATTTGGAGGGAGATCCCTAA | 2931 | 42.07 | MSFLWFISLLSLCCGIFPLGFGKNISTRPSVVNIGAILSFNSTIGKVAMIAIEEAVKDVNADPSILPGTNLWLQKQNSNCSGFLGMVEGLFLIQPRTNDEFVVVLQLMENETVAIIGPQSSVVAHISSQVATEFQVPLVSFSATDPTLSALQFPFFVRAAQSDLFQMTAVAEIVEKYNWKEVIAIYVDDDYGWNGIATLGDKLAERRCKITYKVGISPDSVDNRARVMDQLVKVALMESRVMVLHVNPKLGTLVFSVAKYLQMMGNGYVWIATDWLSSLLDSVVPPPLEIMESMQGVLSLRQHTAESDKKRAFLSRWNKLTGGSLGLNAYGLYAYDSVWVVAHAIDKFFNQGGVVTHSNDSKLHFSESGDLHLEAMTIFDGGNRLLNNILESDFVGLTGAIKFDSDRSLLHPAYDIINIIGTGSRRVGYWSNYSGLSIDAPETLYSKPPNRSHANQKLYEVIWPGNTIEQPRGWVFPNNGKLLKIGVPLRVSYKEFVSKIKGTENFQGFCIDVFTAAVDLLPYAVPRQFIAFGDGHHNPNYTDLVHGITTGKFDAVVGDIAIVTSRTRLVDFTLPYTASGLVVVAPFKKLNTGAWAFLHPFSPAMWMVTASFFLFIGISIGRMMNSEAHLEDNVLQFYGEVLYLRSSSTICPIINIFQFVTYTLKNGQRSPFDLESCLKTVFMKDMVSLELKLTLAKEENTISTLGRLVLIIWLFVVLIVNSSYTASLTSILTVQQLYSPITGIETLREGGEPIGFQVGSFAERYLREELNISRSRLIPLGSPEEYAKALVLGPDKEGGVAAIVDELLYVESFLSRQCSFRVVGQEFTKSGWGFAFPRDSPLAIDLSTAILQLSENGDLQRIHDKWLVKSACTMDNAELESDRLQLKSFWGLFLICGIACFIALAIYCFQIIRQLYRTDAKESDLSNSSGSHSNRLRRIMSLLDEKKEPSKRGSKRRKVEKSSENDKNVDHLEGDP | 976 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 25427138 | 25430822 | + | Lsi04G018260.1 | Lsi04g01826 | 661875 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi04g01826 | 976 | MobiDBLite | consensus disorder prediction | 942 | 976 | - | - | |
Lsi04g01826 | 976 | SMART | GluR_14 | 484 | 869 | IPR001320 | GO:0015276|GO:0016020 | |
Lsi04g01826 | 976 | Pfam | Receptor family ligand binding region | 49 | 420 | IPR001828 | - | |
Lsi04g01826 | 976 | SUPERFAMILY | Periplasmic binding protein-like II | 461 | 869 | - | - | |
Lsi04g01826 | 976 | Pfam | Bacterial extracellular solute-binding proteins, family 3 | 501 | 868 | IPR001638 | - | |
Lsi04g01826 | 976 | PIRSF | IGluLR_plant | 680 | 974 | IPR017103 | - | |
Lsi04g01826 | 976 | PIRSF | IGluLR_plant | 1 | 629 | IPR017103 | - | |
Lsi04g01826 | 976 | Pfam | Ligand-gated ion channel | 869 | 900 | IPR001320 | GO:0015276|GO:0016020 | |
Lsi04g01826 | 976 | Gene3D | - | 50 | 411 | - | - | |
Lsi04g01826 | 976 | PANTHER | IONOTROPIC GLUTAMATE RECEPTOR | 693 | 972 | - | - | |
Lsi04g01826 | 976 | PANTHER | IONOTROPIC GLUTAMATE RECEPTOR | 11 | 620 | - | - | |
Lsi04g01826 | 976 | Gene3D | - | 162 | 436 | - | - | |
Lsi04g01826 | 976 | SUPERFAMILY | Periplasmic binding protein-like I | 28 | 475 | IPR028082 | - | |
Lsi04g01826 | 976 | CDD | PBP1_GABAb_receptor_plant | 33 | 437 | IPR044440 | - | |
Lsi04g01826 | 976 | PRINTS | Metabotropic glutamate GPCR signature | 182 | 199 | IPR000337 | GO:0004930|GO:0007186|GO:0016021 | |
Lsi04g01826 | 976 | PRINTS | Metabotropic glutamate GPCR signature | 115 | 141 | IPR000337 | GO:0004930|GO:0007186|GO:0016021 | |
Lsi04g01826 | 976 | PRINTS | Metabotropic glutamate GPCR signature | 147 | 166 | IPR000337 | GO:0004930|GO:0007186|GO:0016021 | |
Lsi04g01826 | 976 | PRINTS | Metabotropic glutamate GPCR signature | 60 | 79 | IPR000337 | GO:0004930|GO:0007186|GO:0016021 | |
Lsi04g01826 | 976 | PRINTS | Metabotropic glutamate GPCR signature | 166 | 182 | IPR000337 | GO:0004930|GO:0007186|GO:0016021 | |
Lsi04g01826 | 976 | PANTHER | GLUTAMATE RECEPTOR 3.3 | 693 | 972 | - | - | |
Lsi04g01826 | 976 | PANTHER | GLUTAMATE RECEPTOR 3.3 | 11 | 620 | - | - | |
Lsi04g01826 | 976 | Gene3D | - | 833 | 866 | - | - | |
Lsi04g01826 | 976 | Gene3D | - | 593 | 754 | - | - | |
Lsi04g01826 | 976 | Gene3D | - | 797 | 832 | - | - | |
Lsi04g01826 | 976 | CDD | GluR_Plant | 481 | 867 | - | - | |
Lsi04g01826 | 976 | Gene3D | - | 489 | 592 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g00527 | Lsi-Chr1:4324354 | Lsi04g01826 | Lsi-Chr4:25427138 | 0 | dispersed | |
Lsi04g01826 | Lsi-Chr4:25427138 | Lsi10g00140 | Lsi-Chr10:2214247 | 0 | dispersed | |
Lsi04g01823 | Lsi-Chr4:25408210 | Lsi04g01826 | Lsi-Chr4:25427138 | 7.49E-87 | proximal | |
Lsi11g01292 | Lsi-Chr11:21564679 | Lsi04g01826 | Lsi-Chr4:25427138 | 1.25E-173 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi04g01826 | K05387 | - | csv:101204862 | 1607.81 |