Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01828 ATGGCGAGACTTTTGGATGCATCATACCGTGACTTGAGGCGAGCGAGGGCTGCAACTTTGAACATTGTCCCTATGAGCATGGGTGCAGCAAAGACTGTGTCCCTTGTGCTTCCCCAACTTAAGGGCAAGCTCAATAGTATTGCACTTCATGTGCCTACTCCAAACGTTTCAGTTGTCGATCTCGTTGTGAACGTTGAGAAGAAAGGCATCTCCCCCGACGACGTCAATGTTGCCTTTAGAAAGGTAGCTGATGGACCATTGAAGGGCGTTTTAGCTGTGTGCGATATCCCTCTTGTTTCTGTAGACTTCAAGTATACTGATGTTTCCTCCACGATTGACTCCTCATTAACAATAGTAATGGGAGATGACATGCTCAAGATCCCAAAGAGTTGTCGACTTGACTCATTTGGTGGCAAACAAATAACTAGGGGCAAGATCGGGAAAAAGCAGAGATTCATTGGAAGACTTCTGTCAGACTAA 480 45.83 MARLLDASYRDLRRARAATLNIVPMSMGAAKTVSLVLPQLKGKLNSIALHVPTPNVSVVDLVVNVEKKGISPDDVNVAFRKVADGPLKGVLAVCDIPLVSVDFKYTDVSSTIDSSLTIVMGDDMLKIPKSCRLDSFGGKQITRGKIGKKQRFIGRLLSD 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25431480 25432784 - Lsi04G018280.1 Lsi04g01828 661877

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01828 159 Gene3D Dihydrodipicolinate Reductase; domain 2 3 127 - -
Lsi04g01828 159 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 2 3 127 IPR020831 GO:0016620
Lsi04g01828 159 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPB, CHLOROPLASTIC 3 127 - -
Lsi04g01828 159 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 3 127 - -
Lsi04g01828 159 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 3 127 IPR020829 GO:0016620
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01828 K05298 GAPA; glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) [EC:1.2.1.13] - csv:101205112 195.282
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01828 Lsi-Chr4:25431480 Lsi05g00423 Lsi-Chr5:5409250 5.56E-32 dispersed
Lsi04g01824 Lsi-Chr4:25411619 Lsi04g01828 Lsi-Chr4:25431480 1.77E-59 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g68 Blo01g01643 . . . Bpe02g00301 . . Bma01g02416 . . Cma01g02029 Cma09g00036 Car01g01596 . . Cpe06g00010 . . . . . . . . . . . . . . . . . Cone17ag1465 Cone20ag0011 Lsi04g01828 Csa04g02722 . . . . Bda11g00981 . . . . . Sed01g2415 Cmo01g02084 Cmo09g00037 . . . Car09g00031 . . Bhi09g02843 Tan01g5131 Cmetu07g0789 . Hepe01g2355 Mch11g0042 . Cla11g01837 Cam11g1904 Cec11g1931 Cco11g1940 Clacu11g2068 Cmu11g1874 Cre11g2282 . . Chy07g00409 Cme07g00039
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0064251 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01828 Lsi_Chr04 FPKM 0.0 0.0 0.0 0.463253 1.27668 1.223348 1.474589 1.511197 1.843641 2.098114