Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01829 ATGGCAGGGTCCGTACCGAAAACCTTGGATTCTTGTCTCATTGATCGCCTTCTTCCTCAAATTCGTTCACAATCCTCTCCCAACCAAAGAGAGAATGCGAGGCAAGAAGTGTTTTCTCTACCAATTTCAAGAAGGTCTGCAATTTTAATCTCTTCGCTACCTTTCACTCTCGTTTCTGTATCTCCATCCAAGGCAAGAGAGAGAAGGAACAAGAACACCATTCCTCTCGAGGATTATCTCACCAGCCCAAATGGACTGAAGTACTATGATATCGAGGAGGGAAAGGGTCCTGTGGCAGAGAAGGGATCCACAGTTCAGGTGCACTTTGATTGCCTCTATAGAGGGATTACAGCTGTGTCAAGTCGAGAATCTAAACTCTTGGCTGGAAATCGTATAATCGCCCAGCCTTATGAGTTCAAAGTAGGAGCCCCTCCCGGGAAGGAGCGGAAACGTGATTTTGTGGACAATCCAAATGGTCTGTTTTCAGCACAGGCTGCACCTAAACCCCCACCAGCAATGTACTCCATAACTGAAGGGATGAAAGTTGGGGGAAAGCGAAAGGTGATTGTTCCTCCTGAGGCTGGATATGGTCAAAAGGGAATGAATGAAATCCCACCTGGAGCTACTTTTGAATTGAACATCGAGCTTTTAGAAGTGGTGCAGCCTGAGAAAGGTGGGGCCTGA 684 46.93 MAGSVPKTLDSCLIDRLLPQIRSQSSPNQRENARQEVFSLPISRRSAILISSLPFTLVSVSPSKARERRNKNTIPLEDYLTSPNGLKYYDIEEGKGPVAEKGSTVQVHFDCLYRGITAVSSRESKLLAGNRIIAQPYEFKVGAPPGKERKRDFVDNPNGLFSAQAAPKPPPAMYSITEGMKVGGKRKVIVPPEAGYGQKGMNEIPPGATFELNIELLEVVQPEKGGA 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25432642 25436505 + Lsi04G018290.1 Lsi04g01829 661878

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01829 227 Gene3D - 60 225 IPR046357 GO:0003755
Lsi04g01829 227 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 97 217 IPR001179 GO:0003755
Lsi04g01829 227 SUPERFAMILY FKBP-like 71 219 - -
Lsi04g01829 227 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 102 220 IPR001179 GO:0003755
Lsi04g01829 227 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP18, CHLOROPLASTIC 19 223 IPR044180 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01829 K01802 E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8] - csv:101206539 412.92
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01829 Lsi-Chr4:25432642 Lsi03g01956 Lsi-Chr3:30959868 1.57E-17 dispersed
Lsi04g01825 Lsi-Chr4:25420564 Lsi04g01829 Lsi-Chr4:25432642 3.59E-158 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g63 Blo01g01645 . . . Bpe02g00299 . . Bma01g02417 . . Cma01g02031 . Car01g01598 . . . . . . . . . . . . . . . . . . Cone4ag2033 Cone7ag1947 . . Lsi04g01829 Csa04g02725 . . . . Bda11g00983 . . . . . Sed01g2411 Cmo01g02086 . . . . . . Cpe02g00023 Bhi09g02841 Tan01g5134 Cmetu07g1872 . Hepe01g2357 Mch11g0041 . Cla11g01840 Cam11g1907 Cec11g1933 Cco11g1943 Clacu11g2070 Cmu11g1876 Cre11g2284 . . Chy07g00411 Cme07g00037
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006911 1 1 0 1 1 0 1 0 0 1 1 1 1 1 1 1 0 2 1 1 1 1 1 1 1 2 1 5 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01829 Lsi_Chr04 FPKM 5.883371 8.213007 3.109703 3.286756 13.271806 11.49441 12.613729 4.775792 5.082486 4.179415