Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01830 ATGCGTCCCTTCAGATATCTTGCCGGCGTCAACTCCTCCGCCATCTCCGACACCGTCGAGCCTGAAAGGTATGACTCTGACTTCGTCATAATCCTTGCCGCCCTCCTCTGCGCTTTGATTTGCGTTCTCGGTCTTGTTGCTGTTGCTCGCTGCGCCTGGCTACGACACCTCGCCGGCGATGGCGGCGGCGCTGCTTCCACTCGTCCTCCTCCACCTCCTGCCTCCAACAAAGGTCTCAAGAAGAAGATCCTGAGGTCTCTTCCGAAGTACACCTTCACCGCTGAGTTTTCTGCTCAGTTCTCAGATTGCGCGATCTGCCTCGCGGAGTTCGCTGTCGGTGATGAAATCCGTGTGTTGCCGCAGTGTGGCCATGGATTTCACATGTCCTGCATCGATACGTGGTTCCGATCTCACTCTTCCTGTCCTTCCTGCCGTCAGATTCTGGTGGTAAGTCAGTGCCAGAAGTGCGGCGGTTTTCCGGCAAGCTCGAGTTCGAACGGTGGAACGGAATACAGAATGAAAGAGGAAGGAGATGATAAGACGAATAGCCGAGATGGCATAACTTTACAGTACAGGCGATTAATTCGAAAAGGGGAACAGTATCAGTATCAGTATCATCAGTATCATGTGGATGATGAACATTGCAACTGCCAATGTGATTTGTTTATTTCCATTTTGGATCGCATTTTTCAGCAGCAAATGGCTCCTCCTCTCTTCATCTCTCTTCACATTGCCAATTTTTCTCTCTCCTCCGCCCTGAAGATTTAA 768 51.04 MRPFRYLAGVNSSAISDTVEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDGGGAASTRPPPPPASNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLPQCGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTEYRMKEEGDDKTNSRDGITLQYRRLIRKGEQYQYQYHQYHVDDEHCNCQCDLFISILDRIFQQQMAPPLFISLHIANFSLSSALKI 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25437672 25439076 + Lsi04G018300.1 Lsi04g01830 661879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01830 255 SMART ring_2 103 144 IPR001841 -
Lsi04g01830 255 PANTHER RING-H2 FINGER PROTEIN ATL8 2 179 - -
Lsi04g01830 255 CDD RING-H2_PA-TM-RING 102 145 - -
Lsi04g01830 255 MobiDBLite consensus disorder prediction 162 182 - -
Lsi04g01830 255 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Lsi04g01830 255 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 2 179 - -
Lsi04g01830 255 Pfam Ring finger domain 102 145 IPR001841 -
Lsi04g01830 255 SUPERFAMILY RING/U-box 84 150 - -
Lsi04g01830 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 149 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g02276 Lsi-Chr3:33671093 Lsi04g01830 Lsi-Chr4:25437672 4.63E-32 dispersed
Lsi04g01830 Lsi-Chr4:25437672 Lsi10g00710 Lsi-Chr10:9926794 5.96E-35 dispersed
Lsi03g00564 Lsi-Chr3:6818230 Lsi04g01830 Lsi-Chr4:25437672 1.28E-10 transposed
Lsi04g01830 Lsi-Chr4:25437672 Lsi07g01038 Lsi-Chr7:15743058 2.49E-56 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01830 - - csv:101207021 338.191