Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01831 ATGGCATCCAATTGGACTCTGCAGTTACATTCTCTTTCTTTCCAGCCATACATATGGGGGTTTCGAAAGCCTCCTGCTCTGTACGGCATATCCGAACTTGGAATTGGTTATGAATGCGCTGGCATTAGGTATGGTCATTTGAACTGCAACTGGAATAGGCATCGAATTGGTCGCAAATTTCTAATAAAATCGGCTGAGGGTTCCGGGAGCACTGATTCCGGCGGAAATGTCGAAGATGATGAAATTGTGGTCAAGAGTGGGACTGCTGGTGTGGATTCCAAAGATTACATCGGGAAAATGCAGGATATGATTATTTCGTCACCTCCAGGCGTTTTCTTGATGAACAAATGTACTGGAAACAGTCTTGCTATTGGGTTTTGCGTTCTAACTGCTTGTTTAGCCATAGTTGCAAGAGTGTATTTGATGGGGAAGTCCAGGAACAATCATTCTGGATCAGTGGCTGATCTAGTCAGGCGTGGTCAGCTAAGATCCGACAGAAGAGGCATTTCTAAACCTTTAAAATACAACGACCCGTTTAATAATCCACTGGTGAAGGTTGACAAAAGCAATTCATCTGTAGAAATGTGTGGAAAGGTTTATCGGTTGGCCCCAGTTACTCTTACCAAGGAGGAACAAAGTATTCATCAGAAACGGAGGTCTCGGGCATATCAGTGGAAGAGACCAACCATGTTTCTTAAGGAAGGAGATTCAATTCCTCCTGATGTTGACCCCGATACAATCAGGTGGATTCCTGCAAACCATCCTTTTGCAACAACAGCTAGTGATATTGATGAAGACTTGGCCCAGAACAATGTGTACCAAAAGCATGGTGTTCCTTTCCGTATTCAAGCTGAGCATGAGGCTTTGCAGAGAAAGCTTGAAGCACTCCAGAGTGAACAGAAACTGAATAATTTATTTATCGATCCTGGAAGTGTGAAGGATTTTGAGAGGCCTTTTAAGTCGAAATCCAAGTCAGATGAACAAGTAGAACAAAGTTTTTCAGATCACCAAGCTGGAGAGTCAAAGCCTCCCAACTCGGGACATCTCCCAAGTTCGTTCGGGGGACAATCATCCTCTGATGAAGCACAGAAATCCTGA 1098 43.9 MASNWTLQLHSLSFQPYIWGFRKPPALYGISELGIGYECAGIRYGHLNCNWNRHRIGRKFLIKSAEGSGSTDSGGNVEDDEIVVKSGTAGVDSKDYIGKMQDMIISSPPGVFLMNKCTGNSLAIGFCVLTACLAIVARVYLMGKSRNNHSGSVADLVRRGQLRSDRRGISKPLKYNDPFNNPLVKVDKSNSSVEMCGKVYRLAPVTLTKEEQSIHQKRRSRAYQWKRPTMFLKEGDSIPPDVDPDTIRWIPANHPFATTASDIDEDLAQNNVYQKHGVPFRIQAEHEALQRKLEALQSEQKLNNLFIDPGSVKDFERPFKSKSKSDEQVEQSFSDHQAGESKPPNSGHLPSSFGGQSSSDEAQKS 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25448720 25452798 + Lsi04G018310.1 Lsi04g01831 661880

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01831 365 MobiDBLite consensus disorder prediction 313 365 - -
Lsi04g01831 365 MobiDBLite consensus disorder prediction 313 333 - -
Lsi04g01831 365 PANTHER PROTEIN MULTIPLE CHLOROPLAST DIVISION SITE 1 2 363 IPR034572 GO:0009507|GO:0010020
Lsi04g01831 365 MobiDBLite consensus disorder prediction 334 365 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01831 - - - bhj:120087009 679.093
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01825 Lsi-Chr4:25420564 Lsi04g01831 Lsi-Chr4:25448720 3.96E-23 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g60 . Blo12g00847 . . . Bpe04g00289 . . . . Cma01g02032 Cma09g00033 Car01g01600 . . . . . . . . . . . . . . . . . . Cone4ag2035 Cone7ag1948 Cone17ag1471 Cone20ag0008 Lsi04g01831 Csa04g02728 . . . . . . . . . . . Cmo01g02087 Cmo09g00034 . . . Car09g00028 . Cpe02g00021 Bhi09g02839 Tan01g5137 . . . Mch11g0040 . Cla11g01841 Cam11g1909 Cec11g1934 Cco11g1946 Clacu11g2072 Cmu11g1878 Cre11g2286 . . Chy07g00414 Cme07g00035
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003874 1 2 1 1 1 0 2 0 0 1 1 1 2 1 1 2 0 1 2 0 1 1 1 1 1 1 1 1 11 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01831 Lsi_Chr04 FPKM 0.0 0.0 3.747516 3.446267 3.154021 2.904958 3.203925 0.0 0.0 0.0