Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01835 ATGGAGCTAAAAAGAGTCAAAGACTTTTTCCTTCGGTGTGAAGTGGAACCAAGTTCTTTTTTTAGTCATTCAACAAATGACATGAACGAGAATGACAGAAAGCGTAGATTCAAAACTAGAGAGCTAGCTATGGCTCTGTCTAAGTTATTGTCTCTAGCTCTGTGCATGTCCCTTTTTGTTGTAGCAAGTTGTGGGAAGGACTTTTCCATTGTGGGTTACTCGCCAGAAGACTTAACTTCCATGGATAAACTAATTGAGCTATTCGAAGAATGGATATCAAAGCATGGCAAGATTTATGAGACCATCGAAGAAAAGTGGCAAAGATTTGAGGTGTTTAAAGACAACTTGAAGCACATTGACGAAACAAACAAGAAAGTGAGTAGTTATTGGCTTGGACTTAATGAGTTTGCTGATTTGACCCATCAAGAGTTCAAAAAGATGTATCTTGGTCTAAAAATTGAGTCATCTCGAACAAGGCAATCCCCAGAAGAGTTCACTTACAAGGATGTCGTAGATTTGCCCAAGTCGGTGGATTGGAGAAAGAAAGGAGCTGTCACTCGTGTCAAGAACCAAGGTTCATGTGGTAGCTGCTGGGCATTTTCCACTGTTGCTGCAGTTGAAGGGATAAATAAGATTGTTAATGGAAATCTGACTTCGTTATCAGAACAGGAACTAATTGATTGCGATAGACCTTATAACAACGGGTGCCATGGGGGTCTCATGGATTATGCATTTTCTTTTATTGTGTCTAGTGGTGGACTTCACAAGGAAGAAGACTACCCTTATCTCGAGGAGGAAAGCACTTGCGATAACAAAAAGGGGGAATTGGAGGTAGTGACAATTTCTGGGTATAAGGACGTACCGGAGAACAATGAAGCCAGCCTCATAAAGGCATTGGCACACCAGCCACTCAGCGTGGCCATAGAAGCTTCAGGAAGAGATTTCCAATTCTACAGCGGGGGCGTTTTTGATGGACCCTGTGGAACCGAGCTTGATCATGGAGTCACAGCCGTTGGATACGGATCATCAAAGGGAGTGGACTACATCATTGTGAAGAACTCATGGGGACCCAAATGGGGAGAGAAAGGATATATAAGAATGAAGAGAAACACTGGGAAGGCTGCAGGGCTCTGTGGAATCAATAAAATGGCTTCCTATCCTACTAAAAATAAGTGA 1176 42.43 MELKRVKDFFLRCEVEPSSFFSHSTNDMNENDRKRRFKTRELAMALSKLLSLALCMSLFVVASCGKDFSIVGYSPEDLTSMDKLIELFEEWISKHGKIYETIEEKWQRFEVFKDNLKHIDETNKKVSSYWLGLNEFADLTHQEFKKMYLGLKIESSRTRQSPEEFTYKDVVDLPKSVDWRKKGAVTRVKNQGSCGSCWAFSTVAAVEGINKIVNGNLTSLSEQELIDCDRPYNNGCHGGLMDYAFSFIVSSGGLHKEEDYPYLEEESTCDNKKGELEVVTISGYKDVPENNEASLIKALAHQPLSVAIEASGRDFQFYSGGVFDGPCGTELDHGVTAVGYGSSKGVDYIIVKNSWGPKWGEKGYIRMKRNTGKAAGLCGINKMASYPTKNK 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25467485 25469446 + Lsi04G018350.1 Lsi04g01835 661884

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01835 391 SMART Inhibitor_I29_2 88 144 IPR013201 -
Lsi04g01835 391 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 64 389 - -
Lsi04g01835 391 PRINTS Papain cysteine protease (C1) family signature 333 343 IPR000668 GO:0006508|GO:0008234
Lsi04g01835 391 PRINTS Papain cysteine protease (C1) family signature 348 354 IPR000668 GO:0006508|GO:0008234
Lsi04g01835 391 PRINTS Papain cysteine protease (C1) family signature 191 206 IPR000668 GO:0006508|GO:0008234
Lsi04g01835 391 PANTHER CYSTEINE PROTEASE XCP1-LIKE 64 389 - -
Lsi04g01835 391 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 331 341 IPR025660 -
Lsi04g01835 391 SUPERFAMILY Cysteine proteinases 83 388 IPR038765 -
Lsi04g01835 391 CDD Peptidase_C1A 174 387 IPR039417 -
Lsi04g01835 391 Gene3D Cysteine proteinases 67 390 - -
Lsi04g01835 391 Pfam Papain family cysteine protease 173 388 IPR000668 GO:0006508|GO:0008234
Lsi04g01835 391 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 191 202 IPR000169 -
Lsi04g01835 391 SMART pept_c1 173 388 IPR000668 GO:0006508|GO:0008234
Lsi04g01835 391 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 348 367 IPR025661 -
Lsi04g01835 391 Pfam Cathepsin propeptide inhibitor domain (I29) 88 144 IPR013201 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01835 K16290 XCP; xylem cysteine proteinase [EC:3.4.22.-] - csv:101205826 680.248
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01835 Lsi-Chr4:25467485 Lsi11g00782 Lsi-Chr11:9068160 3.95E-92 dispersed
Lsi05g02071 Lsi-Chr5:27620481 Lsi04g01835 Lsi-Chr4:25467485 2.88E-06 dispersed
Lsi05g01789 Lsi-Chr5:25240567 Lsi04g01835 Lsi-Chr4:25467485 2.19E-09 transposed
Lsi10g00095 Lsi-Chr10:1518714 Lsi04g01835 Lsi-Chr4:25467485 1.01E-110 transposed
Lsi11g01302 Lsi-Chr11:21647277 Lsi04g01835 Lsi-Chr4:25467485 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g53 . . . . . . . . . . . . Car01g01605 . . . . . . . . . . . . . . . . . . Cone4ag2036 . . . Lsi04g01835 Csa04g02733 . . . . . . . . . . . Cmo01g02094 . . . . . . Cpe02g00017 Bhi09g02835 Tan01g5151 Cmetu07g1435 . Hepe01g2364 Mch11g0035 . Cla11g01846 Cam11g1913 Cec11g1938 Cco11g1951 Clacu11g2077 Cmu11g1882 Cre11g2290 . . . Cme07g00030
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002657 1 2 2 0 1 1 3 1 1 2 2 2 2 2 2 2 1 3 2 2 2 2 2 2 2 2 2 2 2 2 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g01835 Lsi_Chr04 FPKM 4.004584 4.643097 45.584007 41.404602 9.073094 11.620911 10.493102 72.10804 70.000252 69.614288