Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01838 ATGCCTAGTTTTTTACCAATTCCCATTTCCTTAGAAAAATTAGAAAAAGAAAAAAAAAGAAAAAAAATGGGAAGAGGGAAGATTGAAATAAAGAGAATAGAGAACTCAAGCAACAGACAAGTGACATATTCAAAGAGAAGAAATGGAATTATCAAGAAAGCCAAAGAAATTACTGTTCTTTGTGATGCTCAAGTTTCTCTTGTCATTTTTGCTAGCTCTGGAAAAATGCATGAGTATTGCAGCCCTTCTACACCTTTGATTGACATCTTGGATAAGTATCACAAGCAATCTGGGAAGAGGCTCTGGGATGCTAAGCACGAGAATCTGAGCAATGAAATGGATAGGGTTAAGAAAGAAAATGACAACATGCAGATTGAGCTCAGGATGAAATTTATATATGAAAGAATGATGGAAGAAGAGAACAAGCGCCTCAACTATGAGCTGTACCAAAAGGAGATGGTAGCAATGGGAGATAGTGTGAGAGAGATGGATAATGGATATAATCAAAGAATGAGAGATTTCAATTCTCAGATGCCTTTTGCCTTCAGAGTGCAGCCTATTCAGCCAAATCTACAAGAAAGGAACAATTAA 591 36.38 MPSFLPIPISLEKLEKEKKRKKMGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAQVSLVIFASSGKMHEYCSPSTPLIDILDKYHKQSGKRLWDAKHENLSNEMDRVKKENDNMQIELRMKFIYERMMEEENKRLNYELYQKEMVAMGDSVREMDNGYNQRMRDFNSQMPFAFRVQPIQPNLQERNN 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25508920 25515731 + Lsi04G018380.1 Lsi04g01838 661887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01838 196 Gene3D - 35 124 IPR036879 GO:0003677|GO:0046983
Lsi04g01838 196 SMART madsneu2 23 82 IPR002100 GO:0003677|GO:0046983
Lsi04g01838 196 Coils Coil 99 126 - -
Lsi04g01838 196 PANTHER SERUM RESPONSE FACTOR HOMOLOG 130 194 - -
Lsi04g01838 196 PANTHER SERUM RESPONSE FACTOR HOMOLOG 23 128 - -
Lsi04g01838 196 SUPERFAMILY SRF-like 24 118 IPR036879 GO:0003677|GO:0046983
Lsi04g01838 196 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 32 79 IPR002100 GO:0003677|GO:0046983
Lsi04g01838 196 PANTHER FLORAL HOMEOTIC PROTEIN PISTILLATA 130 194 - -
Lsi04g01838 196 PANTHER FLORAL HOMEOTIC PROTEIN PISTILLATA 23 128 - -
Lsi04g01838 196 ProSitePatterns MADS-box domain signature. 25 79 IPR002100 GO:0003677|GO:0046983
Lsi04g01838 196 PRINTS MADS domain signature 25 45 IPR002100 GO:0003677|GO:0046983
Lsi04g01838 196 PRINTS MADS domain signature 60 81 IPR002100 GO:0003677|GO:0046983
Lsi04g01838 196 PRINTS MADS domain signature 45 60 IPR002100 GO:0003677|GO:0046983
Lsi04g01838 196 ProSiteProfiles MADS-box domain profile. 23 83 IPR002100 GO:0003677|GO:0046983
Lsi04g01838 196 CDD MADS_MEF2_like 28 102 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01716 Lsi-Chr4:24503790 Lsi04g01838 Lsi-Chr4:25508920 5.43E-33 dispersed
Lsi04g01838 Lsi-Chr4:25508920 Lsi01g00027 Lsi-Chr1:320358 9.90E-29 dispersed
Lsi04g01838 Lsi-Chr4:25508920 Lsi07g00957 Lsi-Chr7:12109274 3.45E-26 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25231 PF00319 SRF-TF 1.80E-22 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01838 K09264 - csv:101222239 295.819