Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g01839 ATGCAGTTATATCATCATCCATACTCTTTGGATAGCCAGAAGGTGAGACTTGCCTTGGAAGAGCAAGGCATTGATTACACGTCGTATCATGTTAATCCCATCACGGCCAAGAACATGGACTCCTCATTCTTCAAGATCAACCCAAGTGCAAAGCTTCCCGTCTTTCAAAATGGTTCGCACGTCATTTTCGACACGATTGAGATAATTCAGTATATAGAGAGAATTGCAGTTGTCTCCTCAGGGATCGACGACGTAATGCTGAGTAGCAGAGAAGTTGTTGAATGGATGCATAAGATTCAAGAATGGAATCCAAAATTTTTCACTCTTGCCCACATCCCTGAGAAGTACCGCCTTACTGTTACCAGATTTGTAAGGCGGGTGGTGATCGCACGGATGGCTGAAACTCCCGAAATGGCTGCTGCTTACCATCGTAAGCTCAGAGAAGCATACGAAACTGAAGACAAATTGAAAAACAAAACTGTTGTCAGACAAAGCACTGAACATCTAGTTAGACTTCTTGATGAAATCGAATCGAAACTAGGCGAAACTTCTTATTTAGCAGGAGAAGAGTTTACAATGGCTGATGCCGTGTTCATTCCGGTGCTGGCTCGAATCGTGCTGTTGAAGCTGGCGGACGAGTATATAGGCAGCAGACCAAACATTGCAGAGTATTGGATCTTGGTGCAGCAGAGGCCAAGCTACAAGAAGGTAATTGGGAAGTACTTCAATGGATGGAGAAAGCACAAAACACTTCTGAAAACCTGGTGCTTTGTTCATATCAGAACCTTGCTGAGGAGATATTGA 804 43.78 MQLYHHPYSLDSQKVRLALEEQGIDYTSYHVNPITAKNMDSSFFKINPSAKLPVFQNGSHVIFDTIEIIQYIERIAVVSSGIDDVMLSSREVVEWMHKIQEWNPKFFTLAHIPEKYRLTVTRFVRRVVIARMAETPEMAAAYHRKLREAYETEDKLKNKTVVRQSTEHLVRLLDEIESKLGETSYLAGEEFTMADAVFIPVLARIVLLKLADEYIGSRPNIAEYWILVQQRPSYKKVIGKYFNGWRKHKTLLKTWCFVHIRTLLRRY 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25517471 25520893 - Lsi04G018390.1 Lsi04g01839 661888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g01839 267 PANTHER GLUTATHIONE S-TRANSFERASE TCHQD 1 267 IPR044617 GO:0004364
Lsi04g01839 267 SUPERFAMILY Thioredoxin-like 1 74 IPR036249 -
Lsi04g01839 267 CDD GST_N_family 1 73 - -
Lsi04g01839 267 Gene3D Glutaredoxin 1 75 - -
Lsi04g01839 267 SUPERFAMILY GST C-terminal domain-like 136 241 IPR036282 -
Lsi04g01839 267 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 80 IPR004045 -
Lsi04g01839 267 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 118 251 IPR010987 -
Lsi04g01839 267 Gene3D - 116 238 - -
Lsi04g01839 267 CDD GST_C_family 129 225 - -
Lsi04g01839 267 SFLD Glutathione Transferase (cytosolic) 1 231 IPR040079 -
Lsi04g01839 267 Pfam Glutathione S-transferase, N-terminal domain 3 74 IPR004045 -
Lsi04g01839 267 SFLD Main (cytGST) 1 231 - -
Lsi04g01839 267 Pfam Glutathione S-transferase, C-terminal domain 161 209 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01839 Lsi-Chr4:25517471 Lsi08g01285 Lsi-Chr8:21216527 1.35E-16 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g01839 K22077 - csv:101222476 496.508